The UCSC Genome Browser database: 2019 update

Maximilian Haeussler(University of California, Santa Cruz), Ann S. Zweig(University of California, Santa Cruz), Cath Tyner(University of California, Santa Cruz), Matthew L Speir(University of California, Santa Cruz), Kate R. Rosenbloom(University of California, Santa Cruz), Brian J. Raney(University of California, Santa Cruz), Christopher M Lee(University of California, Santa Cruz), Brian T. Lee(University of California, Santa Cruz), Angie S. Hinrichs(University of California, Santa Cruz), Jairo Navarro Gonzalez(University of California, Santa Cruz), David Gibson(University of California, Santa Cruz), Mark Diekhans(University of California, Santa Cruz), Hiram Clawson(University of California, Santa Cruz), Jonathan D. Casper(University of California, Santa Cruz), Galt P Barber(University of California, Santa Cruz), David Haussler(Howard Hughes Medical Institute), Robert M. Kuhn(University of California, Santa Cruz), W. James Kent(University of California, Santa Cruz)
Nucleic Acids Research
October 20, 2018
10.1093/nar/gky1095
Cited by 1,057Open Access
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Abstract

The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users interactively arrange existing graphing tracks into new groups. Other software additions include new formats for chromosome interactions, a ChIP-Seq peak display for track hubs and improved support for HGVS. On the annotation side, we have added gnomAD, TCGA expression, RefSeq Functional elements, GTEx eQTLs, CRISPR Guides, SNPpedia and created a 30-way primate alignment on the human genome. Nine assemblies now have RefSeq-mapped gene models.

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