Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard(University of California, Los Angeles), Philippe Lemey(Rega Institute for Medical Research), Guy Baele(Rega Institute for Medical Research), Daniel L. Ayres(University of Maryland, College Park), Alexei J. Drummond(University of Auckland), Andrew Rambaut(University of Edinburgh)
Cited by 4,038Open Access
Abstract
The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.
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