Freiburg RNA tools: a central online resource for RNA-focused research and teaching

Martin Raden(University of Freiburg), Syed Mohsin Ali(University of Freiburg), Omer S. Alkhnbashi(University of Freiburg), Anke Busch(Institute of Molecular Biology), Fabrizio Costa(University of Exeter), Jason A. Davis, Florian Eggenhofer(University of Freiburg), Rick Gelhausen(University of Freiburg), Jens Georg(University of Freiburg), Steffen Heyne(Max Planck Institute of Immunobiology and Epigenetics), Michael Hiller(Max Planck Institute for the Physics of Complex Systems), Kousik Kundu(University of Cambridge), Robert Kleinkauf(University of Freiburg), Steffen C. Lott(University of Freiburg), Mostafa M. Mohamed(University of Freiburg), Alexander Mattheis(University of Freiburg), Milad Miladi(University of Freiburg), Andreas S. Richter(Genedata (Switzerland)), Sebastian Will(University of Vienna), Joachim Wolff(University of Freiburg), Patrick R. Wright(University of Basel), Rolf Backofen(University of Freiburg)
Nucleic Acids Research
May 18, 2018
10.1093/nar/gky329
Cited by 174Open Access
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Abstract

The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.

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