American Gut: an Open Platform for Citizen Science Microbiome Research
Daniel McDonald(University of California San Diego), Embriette R. Hyde(University of California San Diego), Justine W. Debelius(University of California San Diego), James T. Morton(University of California San Diego), Antonio González-Torres(University of California San Diego), Gail Ackermann(University of California San Diego), Alexander A. Aksenov(University of California San Diego), Bahar Behsaz(University of California San Diego), Caitriona Brennan(University of California San Diego), Yingfeng Chen(San Diego State University), Lindsay DeRight Goldasich(University of California San Diego), Pieter C. Dorrestein(University of California San Diego), Robert R. Dunn(North Carolina State University), Ashkaan K. Fahimipour(University of Oregon), James Gaffney(University of California San Diego), Jack A. Gilbert(Argonne National Laboratory), Grant Gogul(University of California San Diego), Jessica L. Green(University of Oregon), Philip Hugenholtz(The University of Queensland), Greg Humphrey(University of California San Diego), Curtis Huttenhower(Broad Institute), Matthew Jackson(King's College London), Stefan Janssen(University of California San Diego), Dilip V. Jeste(University of California San Diego), Lingjing Jiang(University of California San Diego), Scott T. Kelley(San Diego State University), Dan Knights(University of Minnesota), Tomasz Kościółek(University of California San Diego), Joshua Ladau(Gladstone Institutes), Jeff Leach, Clarisse Marotz(University of California San Diego), Dmitry Meleshko(St Petersburg University), Alexey V. Melnik(University of California San Diego), Jessica L. Metcalf(Colorado State University), Hosein Mohimani(Carnegie Mellon University), Emmanuel Montassier(University of Minnesota), José A. Navas-Molina(University of California San Diego), Tanya T. Nguyen(University of California San Diego), Shyamal D. Peddada(University of Pittsburgh), Pavel A. Pevzner(University of California San Diego), Katherine S. Pollard(Gladstone Institutes), Ali Rahnavard(Broad Institute), Adam Robbins‐Pianka(University of Colorado Boulder), Naseer Sangwan(Argonne National Laboratory), Joshua Shorenstein(University of California San Diego), Larry Smarr(University of California San Diego), Se Jin Song(University of California San Diego), Timothy Spector(King's College London), Austin D. Swafford(University of California San Diego), Varykina G. Thackray(University of California San Diego), Luke Thompson(National Oceanic and Atmospheric Administration), Anupriya Tripathi(University of California San Diego), Yoshiki Vázquez‐Baeza(University of California San Diego), Alison Vrbanac(University of California San Diego), Paul E. Wischmeyer(Duke University), Elaine Wolfe(University of California San Diego), Qiyun Zhu(University of California San Diego), Rob Knight(University of California San Diego), Allison E. Mann, Amnon Amir, Angel Frazier, Cameron Martino, Carlito B. Lebrilla, Catherine Lozupone, Cecil M. Lewis, Charles L. Raison, Chi Zhang, Christian L. Lauber, Christina Warinner, Christopher A. Lowry, Chris Callewaert, Cinnamon S. Bloss, Dana Willner, Daniela Domingos Galzerani, David J. Gonzalez, David A. Mills, Deepak Chopra, Dirk Gevers, Donna Berg-Lyons, Dorothy D. Sears, Doug Wendel, Elijah Lovelace, Emily C. Pierce, Emily TerAvest, Evan Bolyen, Frederic D. Bushman, Gary D. Wu, George M. Church, Gordon Saxe, Hanna D. Holscher, Ivo Ugrina, J German, J. Gregory Caporaso, Jacob M. Wozniak, Jacqueline Kerr, Jacques Ravel, James D. Lewis, Jan S. Suchodolski, Janet Jansson, Jarrad Hampton‐Marcell, Jason Bobe, Jeroen Raes, John Chase, Jonathan A. Eisen, Jonathan M. Monk, José C. Clemente, Joseph F. Petrosino, Julia K. Goodrich, Julia M. Gauglitz, Julian Jacobs, Karsten Zengler, Kelly S. Swanson, Kim Lewis, Kris Mayer, Kyle Bittinger, Lindsay Dillon, Lívia S. Zaramela, Lynn M. Schriml, Maria Gloria Domínguez-Bello, Marta M. Jankowska, Martin J. Blaser, Meg Pirrung, Michael Minson, Mike Kurisu, Nadim J. Ajami, Neil Gottel, Nicholas Chia, Noah Fierer, Owen White, Patrice D. Cani, Pawel Gajer, Philip Strandwitz, Purna Kashyap, Rachel J. Dutton, Rachel S. Park, Ramnik J. Xavier, Robert H. Mills, Rosa Krajmalnik‐Brown, Ruth E. Ley, Sarah M. Owens, Scott Klemmer, Sébastien Matamoros, Siavash Mirarab, Stephanie Moorman, Susan Holmes, Tara Schwartz, Tifani W. Eshoo-Anton, Tim Vigers, Vineet Pandey, Will Van Treuren, Xin Fang, Zhenjiang Zech Xu, Alan K. Jarmusch, Justin Geier, Nicolai Reeve, Ricardo Silva, Evguenia Kopylova, Dominic Nguyen, Karenina Sanders, Rodolfo Antonio Salido Benítez, Arthur Cole Heale, Max Abramson, Jérôme Waldispühl, Alexander Butyaev, Chris Drogaris, Elena Nazarova, Mad Price Ball, Beau Gunderson
Cited by 899Open Access
Abstract
We show that a citizen science, self-selected cohort shipping samples through the mail at room temperature recaptures many known microbiome results from clinically collected cohorts and reveals new ones. Of particular interest is integrating n = 1 study data with the population data, showing that the extent of microbiome change after events such as surgery can exceed differences between distinct environmental biomes, and the effect of diverse plants in the diet, which we confirm with untargeted metabolomics on hundreds of samples.
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