The UCSC Genome Browser database: 2018 update
Jonathan D. Casper(University of California, Santa Cruz), Ann S. Zweig(University of California, Santa Cruz), Chris Villarreal(University of California, Santa Cruz), Cath Tyner(University of California, Santa Cruz), Matthew L Speir(University of California, Santa Cruz), Kate R. Rosenbloom(University of California, Santa Cruz), Brian J. Raney(University of California, Santa Cruz), Christopher M Lee(University of California, Santa Cruz), Brian T. Lee(University of California, Santa Cruz), Donna Karolchik(University of California, Santa Cruz), Angie S. Hinrichs(University of California, Santa Cruz), Maximilian Haeussler(University of California, Santa Cruz), Luvina Guruvadoo(University of California, Santa Cruz), Jairo Navarro Gonzalez(University of California, Santa Cruz), David Gibson(University of California, Santa Cruz), Ian T. Fiddes(University of California, Santa Cruz), Christopher Eisenhart(University of California, Santa Cruz), Mark Diekhans(University of California, Santa Cruz), Hiram Clawson(University of California, Santa Cruz), Galt P Barber(University of California, Santa Cruz), Joel Armstrong(University of California, Santa Cruz), David Haussler(Howard Hughes Medical Institute), Robert M. Kuhn(University of California, Santa Cruz), W. James Kent(University of California, Santa Cruz)
Cited by 534Open Access
Abstract
The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis-12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.
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