Viewing RNA-seq data on the entire human genome
Eric Weitz(National Center for Biotechnology Information), Lorena Pantano(Harvard University), Jingzhi Zhu(Massachusetts Institute of Technology), Bennett Upton(Louisiana State University in Shreveport), Ben Busby(National Center for Biotechnology Information)
Cited by 2Open Access
Abstract
RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI's Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.
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