OUP accepted manuscript

Cath Tyner(University of California, Santa Cruz), Galt P Barber(University of California, Santa Cruz), Jonathan D. Casper(University of California, Santa Cruz), Hiram Clawson(University of California, Santa Cruz), Mark Diekhans(University of California, Santa Cruz), Christopher Eisenhart(University of California, Santa Cruz), Clayton M. Fischer(University of California, Santa Cruz), David Gibson(University of California, Santa Cruz), Jairo Navarro Gonzalez(University of California, Santa Cruz), Luvina Guruvadoo(University of California, Santa Cruz), Maximilian Haeussler(University of California, Santa Cruz), Steve Heitner(Emory University), Angie S. Hinrichs(University of California, Santa Cruz), Donna Karolchik(University of California, Santa Cruz), Brian T. Lee(University of California, Santa Cruz), Christopher M. Lee(University of California, Santa Cruz), Parisa Nejad(University of California, Santa Cruz), Brian J. Raney(University of California, Santa Cruz), Kate R. Rosenbloom(University of California, Santa Cruz), Matthew L Speir(University of California, Santa Cruz), Chris Villarreal(University of California, Santa Cruz), John Vivian(University of California, Santa Cruz), Ann S. Zweig(University of California, Santa Cruz), David Haussler(Howard Hughes Medical Institute), Robert M. Kuhn(University of California, Santa Cruz), W. James Kent(University of California, Santa Cruz)
Nucleic Acids Research
January 1, 2016
10.1093/nar/gkw1134
Cited by 313Open Access
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Abstract

Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu/) team has provided continuous support to the international genomics and biomedical communities through a web-based, open source platform designed for the fast, scalable display of sequence alignments and annotations landscaped against a vast collection of quality reference genome assemblies. The browser's publicly accessible databases are the backbone of a rich, integrated bioinformatics tool suite that includes a graphical interface for data queries and downloads, alignment programs, command-line utilities and more. This year's highlights include newly designed home and gateway pages; a new 'multi-region' track display configuration for exon-only, gene-only and custom regions visualization; new genome browsers for three species (brown kiwi, crab-eating macaque and Malayan flying lemur); eight updated genome assemblies; extended support for new data types such as CRAM, RNA-seq expression data and long-range chromatin interaction pairs; and the unveiling of a new supported mirror site in Japan.

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