Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

Takuma Hashimoto(The University of Tokyo), Daiki D. Horikawa(The University of Tokyo), Yuki Saito(The University of Tokyo), Hirokazu Kuwahara(The University of Tokyo), Hiroko Kozuka‐Hata(The University of Tokyo), Tadasu Shin‐I(National Institute of Genetics), Yohei Minakuchi(National Institute of Genetics), Kazuko Ohishi(National Institute of Genetics), Ayuko Motoyama(National Institute of Genetics), Tomoyuki Aizu(National Institute of Genetics), Atsushi Enomoto(The University of Tokyo), Koyuki Kondo(The University of Tokyo), Sae Tanaka(The University of Tokyo), Yuichiro Hara(RIKEN Center for Computational Science), Shigeyuki Koshikawa(Hokkaido University), Hiroshi Sagara(The University of Tokyo), Toru Miura(Hokkaido University), Shin‐ichi Yokobori(Tokyo University of Pharmacy and Life Sciences), Kiyoshi Miyagawa(The University of Tokyo), Yutaka Suzuki(The University of Tokyo), Takeo Kubo(The University of Tokyo), Masaaki Oyama(The University of Tokyo), Yuji Kohara(National Institute of Genetics), Asao Fujiyama(National Institute of Genetics), Kazuharu Arakawa(Keio University), Toshiaki Katayama(Research Organization of Information and Systems), Atsushi Toyoda(National Institute of Genetics), Takekazu Kunieda(The University of Tokyo)
Nature Communications
September 20, 2016
Cited by 418Open Access
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Abstract

Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade species tolerate almost complete dehydration and exhibit extraordinary tolerance to various physical extremes in the dehydrated state. Here we determine a high-quality genome sequence of Ramazzottius varieornatus, one of the most stress-tolerant tardigrade species. Precise gene repertoire analyses reveal the presence of a small proportion (1.2% or less) of putative foreign genes, loss of gene pathways that promote stress damage, expansion of gene families related to ameliorating damage, and evolution and high expression of novel tardigrade-unique proteins. Minor changes in the gene expression profiles during dehydration and rehydration suggest constitutive expression of tolerance-related genes. Using human cultured cells, we demonstrate that a tardigrade-unique DNA-associating protein suppresses X-ray-induced DNA damage by ∼40% and improves radiotolerance. These findings indicate the relevance of tardigrade-unique proteins to tolerability and tardigrades could be a bountiful source of new protection genes and mechanisms.


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