SAbPred: a structure-based antibody prediction server

James B. Dunbar(Oxford Research (Norway)), Konrad Krawczyk(University of Oxford), Jinwoo Leem(University of Oxford), Claire Marks(University of Oxford), Jarosław Nowak(University of Oxford), Cristian Regep(University of Oxford), Guy Georges(Roche (Switzerland)), Sebastian Kelm(UCB Pharma (United Kingdom)), Bojana Popovic, Charlotte M. Deane(University of Oxford)
Nucleic Acids Research
April 29, 2016
Cited by 229Open Access
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Abstract

SAbPred is a server that makes predictions of the properties of antibodies focusing on their structures. Antibody informatics tools can help improve our understanding of immune responses to disease and aid in the design and engineering of therapeutic molecules. SAbPred is a single platform containing multiple applications which can: number and align sequences; automatically generate antibody variable fragment homology models; annotate such models with estimated accuracy alongside sequence and structural properties including potential developability issues; predict paratope residues; and predict epitope patches on protein antigens. The server is available at http://opig.stats.ox.ac.uk/webapps/sabpred.


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