Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr(Broad Institute), Brian J. Haas(Broad Institute), Moran Yassour(Broad Institute), Joshua Z. Levin(Broad Institute), Dawn Thompson(Broad Institute), Ido Amit(Broad Institute), Xian Adiconis(Broad Institute), Lin Fan(Broad Institute), Raktima Raychowdhury(Broad Institute), Qiandong Zeng(Broad Institute), Zehua Chen(Broad Institute), Evan Mauceli(Broad Institute), Nir Hacohen(Broad Institute), Andreas Gnirke(Broad Institute), Nick Rhind(University of Massachusetts Chan Medical School), Federica Di Palma(Broad Institute), Bruce W. Birren(Broad Institute), Chad Nusbaum(Broad Institute), Kerstin Lindblad‐Toh(Broad Institute), Nir Friedman(Hebrew University of Jerusalem), Aviv Regev(Broad Institute)
Nature Biotechnology
May 15, 2011
10.1038/nbt.1883
Cited by 22,541Open Access
Full Text

Abstract

Related Papers

TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell, Lior Pachter, Steven L. Salzberg|Bioinformatics|2009|12.1k
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li, Chang Yu, Yingrui Li et al.|Bioinformatics|2009|3.9k
Prediction and Entropy of Printed English
Claude E. Shannon|Bell System Technical Journal|1951|2.7k
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
Ting‐Di Wu, C.K. Watanabe|Computer applications in the biosciences|2005|2.7k
Understanding alternative splicing: towards a cellular code
Arianne J. Matlin, Francis Clark, Christopher W. J. Smith|Nature Reviews Molecular Cell Biology|2005|1.3k