tPatternHunter: gapped, fast and sensitive translated homology search
Derek Kisman(Bioinformatics Solutions (Canada)), Ming Li(University of Waterloo), Bin Ma(Western University), Li Wang(Western University)
Cited by 28Open Access
Abstract
UNLABELLED: New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx. AVAILABILITY: The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/ CONTACT: bma@csd.uwo.ca.
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