Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach

Belinda Giardine(Pennsylvania State University), Joseph Borg(University of Malta), Douglas R. Higgs(MRC Weatherall Institute of Molecular Medicine), Kenneth R. Peterson(University of Kansas Medical Center), Sjaak Philipsen(Erasmus MC), Donna Maglott(National Institutes of Health), Belinda K. Singleton(National Health Service), David J. Anstee(National Health Service), A. Nazlı Başak(Boğaziçi University), Barnaby Clark(King's College London), Flavia C Costa(University of Kansas Medical Center), Paula Faustino(National Institute of Health Dr. Ricardo Jorge), Halyna Fedosyuk(University of Kansas Medical Center), Alex E. Felice(University of Malta), Alain Francina(Hospices Civils de Lyon), Renzo Galanello(University of Cagliari), Monica V.E. Gallivan(Quest Diagnostics (United States)), Marianthi Georgitsi(University of Patras), Richard J. Gibbons(MRC Weatherall Institute of Molecular Medicine), Piero C. Giordano(Leiden University Medical Center), Cornelis L. Harteveld(Leiden University Medical Center), James D. Hoyer(Mayo Clinic), Martin Jarvis(North Middlesex Hospital), Philippe Joly(Hospices Civils de Lyon), Emmanuel Kanavakis(National and Kapodistrian University of Athens), Panagoula Κollia(National and Kapodistrian University of Athens), Stephan Menzel(King's College London), Webb Miller(Pennsylvania State University), Kamran Moradkhani(Hôpital Albert-Chenevier), John Old(Churchill Hospital), Adamantia Papachatzopoulou(University of Patras), Manoussos N. Papadakis(Laiko General Hospital of Athens), Petros Papadopoulos(Erasmus MC), Sonja Pavlović(University of Belgrade), Lucia Perseu(Institute of Genetic and Biomedical Research), Milena Radmilovic(University of Belgrade), Cathy Riemer(Pennsylvania State University), Stefania Satta(University of Cagliari), Iris Schrijver(Stanford University), Maja Stojiljković(University of Belgrade), Swee Lay Thein(King's College London), Jan Traeger-Synodinos(National and Kapodistrian University of Athens), Ray Tully(National Institutes of Health), Takahito Wada(Kanagawa Children's Medical Center), John S. Waye(Hamilton Regional Laboratory Medicine Program), Claudia Wiemann(Medizinisches Versorgungszentrum Prof. Mathey, Prof. Schofer), Branka Zukić(University of Belgrade), David H.K. Chui(Boston University), Henri Wajcman(Inserm), Ross C. Hardison(Pennsylvania State University), George P. Patrinos(University of Patras)
Nature Genetics
March 20, 2011
Cited by 161Open Access
Full Text

Abstract

George Patrinos and colleagues report the first implementation of the microattribution approach to systematically document genetic variation associated with a disease, applied here to hemoglobinopathies and thalassemias. They developed a series of connected locus-specific databases that document genotype and phenotype information for genetic variation in 37 globin and erythroid protein genes in individuals with globin disorders, with reciprocal attribution to data contributors. We developed a series of interrelated locus-specific databases to store all published and unpublished genetic variation related to hemoglobinopathies and thalassemia and implemented microattribution to encourage submission of unpublished observations of genetic variation to these public repositories. A total of 1,941 unique genetic variants in 37 genes, encoding globins and other erythroid proteins, are currently documented in these databases, with reciprocal attribution of microcitations to data contributors. Our project provides the first example of implementing microattribution to incentivise submission of all known genetic variation in a defined system. It has demonstrably increased the reporting of human variants, leading to a comprehensive online resource for systematically describing human genetic variation in the globin genes and other genes contributing to hemoglobinopathies and thalassemias. The principles established here will serve as a model for other systems and for the analysis of other common and/or complex human genetic diseases.


Related Papers

No related papers found

Powered by citation graph analysis