Gateways to the FANTOM5 promoter level mammalian expression atlas
Marina Lizio(RIKEN Center for Integrative Medical Sciences), Jayson Harshbarger(RIKEN Center for Integrative Medical Sciences), Hisashi Shimoji(RIKEN Center for Integrative Medical Sciences), Jessica Severin(RIKEN Center for Integrative Medical Sciences), Takeya Kasukawa, Serkan Sahin(RIKEN Center for Integrative Medical Sciences), Imad Abugessaisa, Shiro Fukuda(RIKEN Center for Integrative Medical Sciences), Fumi Hori(RIKEN Center for Integrative Medical Sciences), Sachi Ishikawa-Kato(RIKEN Center for Integrative Medical Sciences), Chris Mungall(Lawrence Berkeley National Laboratory), Erik Arner(RIKEN Center for Integrative Medical Sciences), J. Kenneth Baillie(Roslin Institute), Nicolas Bertin(National University of Singapore), Hidemasa Bono(Research Organization of Information and Systems), Michiel de Hoon(RIKEN Center for Integrative Medical Sciences), Alexander D. Diehl(University at Buffalo, State University of New York), Emmanuel Dimont(Harvard University), Tom C. Freeman(Roslin Institute), Kaori Fujieda(Research Organization of Information and Systems), Winston Hide(Harvard University), Rajaram Kaliyaperumal(Leiden University Medical Center), Toshiaki Katayama(Research Organization of Information and Systems), Timo Lassmann(The Kids Research Institute Australia), Terrence F. Meehan(European Bioinformatics Institute), Koro Nishikata(RIKEN Center for Advanced Photonics), Hiromasa Ono(Research Organization of Information and Systems), Michael Rehli(University Hospital Regensburg), Albin Sandelin(University of Copenhagen), Erik Schultes(Leiden University), Peter A.C. ’t Hoen(Leiden University Medical Center), Zuotian Tatum(Leiden University Medical Center), Mark Thompson(Leiden University Medical Center), Tetsuro Toyoda(RIKEN Center for Advanced Photonics), Derek Wright(Roslin Institute), Carsten O. Daub(RIKEN Center for Integrative Medical Sciences), Masayoshi Itoh(RIKEN), Piero Carninci(RIKEN Center for Integrative Medical Sciences), Yoshihide Hayashizaki(RIKEN), Alistair R. R. Forrest(RIKEN Center for Integrative Medical Sciences), Hideya Kawaji(RIKEN)
Cited by 941Open Access
Abstract
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
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