New developments in the InterPro database

Nicola Mulder(European Bioinformatics Institute), Rolf Apweiler(European Bioinformatics Institute), Teresa K. Attwood(University of Manchester), Amos Bairoch(University of Geneva), Alex Bateman(Wellcome Sanger Institute), David Binns(European Bioinformatics Institute), Peer Bork(European Molecular Biology Organization), V. Buillard(SIB Swiss Institute of Bioinformatics), Lorenzo Cerutti(SIB Swiss Institute of Bioinformatics), Richard R. Copley(Centre for Human Genetics), Emmanuel Courcelle(Centre National de la Recherche Scientifique), Ujjwal Das(European Bioinformatics Institute), Louise C. Daugherty(European Bioinformatics Institute), Mark Dibley(University of London), ROBERT FINN(Wellcome Sanger Institute), Wolfgang Fleischmann(European Bioinformatics Institute), Julian Gough(RIKEN Center for Integrative Medical Sciences), Daniel H. Haft, Nicolas Hulo(SIB Swiss Institute of Bioinformatics), Sarah Hunter(European Bioinformatics Institute), Daniel Kahn(Université Claude Bernard Lyon 1), Alexander Kanapin(European Bioinformatics Institute), Anish Kejariwal(SRI International), Alberto Labarga(European Bioinformatics Institute), Petra Langendijk-Genevaux(SIB Swiss Institute of Bioinformatics), D. Lonsdale(European Bioinformatics Institute), Rodrigo López(European Bioinformatics Institute), Ivica Letunić(European Molecular Biology Organization), Martin Madera(MRC Laboratory of Molecular Biology), John Maslen(European Bioinformatics Institute), Craig McAnulla(European Bioinformatics Institute), J. McDowall(European Bioinformatics Institute), Jaina Mistry(Wellcome Sanger Institute), Alex Mitchell(University of Manchester), A. N. NIKOL'SKAYA(Georgetown University Medical Center), Sandra Orchard(European Bioinformatics Institute), C. Orengo(University of London), Robert Petryszak(European Bioinformatics Institute), J. D. Selengut, Christian J A Sigrist(SIB Swiss Institute of Bioinformatics), Paul D. Thomas(SRI International), F. Valentin(European Bioinformatics Institute), Derek A. Wilson(MRC Laboratory of Molecular Biology), Cathy Wu(Georgetown University), Corin Yeats(University College London)
Nucleic Acids Research
January 3, 2007
10.1093/nar/gkl841
Cited by 527Open Access
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Abstract

InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html.

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