Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Olivier Delaneau(University of Oxford), Jonathan Marchini(Centre for Human Genetics), Gil McVean(Centre for Human Genetics), Peter Donnelly(Centre for Human Genetics), Gerton Lunter(Centre for Human Genetics), Jonathan Marchini(Centre for Human Genetics), Simon Myers(Centre for Human Genetics), Anjali Gupta Hinch(Centre for Human Genetics), Zamin Iqbal(Centre for Human Genetics), Iain Mathieson(Centre for Human Genetics), Andy Rimmer(Centre for Human Genetics), Dionysia K. Xifara(Centre for Human Genetics), Angeliki Kerasidou(Centre for Human Genetics), Claire Churchhouse(University of Oxford), Olivier Delaneau(University of Oxford), David Altshuler(Broad Institute), Stacey Gabriel(Broad Institute), Eric S. Lander(Broad Institute), Namrata Gupta(Broad Institute), Mark J. Daly(Broad Institute), Mark A. DePristo(Broad Institute), Eric Banks(Broad Institute), Gaurav Bhatia(Broad Institute), Mauricio O. Carneiro(Broad Institute), Guillermo del Angel(Broad Institute), Giulio Genovese(Broad Institute), Robert E. Handsaker(Broad Institute), Chris Hart(Broad Institute), Steven A. McCarroll(Broad Institute), James Nemesh(Broad Institute), Ryan Poplin(Broad Institute), S. F. Schaffner(Broad Institute), Khalid Shakir(Broad Institute), Pardis C. Sabeti(Broad Institute), Sharon R. Grossman(Broad Institute), Shervin Tabrizi(Broad Institute), Ridhi Tariya(Broad Institute), Heng Li(Broad Institute), David Reich(Harvard University), Richard Durbin(Wellcome Sanger Institute), Matthew E. Hurles(Wellcome Sanger Institute), Senduran Balasubramaniam(Wellcome Sanger Institute), John H. Burton(Wellcome Sanger Institute), Petr Danecek(Wellcome Sanger Institute), Thomas Keane(Wellcome Sanger Institute), Anja Kolb-Kokocinski(Wellcome Sanger Institute), Shane McCarthy(Wellcome Sanger Institute), James Stalker(Wellcome Sanger Institute), Michael A. Quail(Wellcome Sanger Institute), Qasim Ayub(Wellcome Sanger Institute), Yuan Chen(Wellcome Sanger Institute), Alison J. Coffey(Wellcome Sanger Institute), Vincenza Colonna(Wellcome Sanger Institute), Ni Huang(Wellcome Sanger Institute), Luke Jostins(Wellcome Sanger Institute), Aylwyn Scally(Wellcome Sanger Institute), Klaudia Walter(Wellcome Sanger Institute), Yali Xue(Wellcome Sanger Institute), Yujun Zhang(Wellcome Sanger Institute), Ben Blackburne(Wellcome Sanger Institute), Sarah Lindsay(Wellcome Sanger Institute), Zemin Ning(Wellcome Sanger Institute), Adam Frankish(Wellcome Sanger Institute), Jennifer Harrow(Wellcome Sanger Institute), Chris Tyler‐Smith(Wellcome Sanger Institute), Gonalo R. Abecasis(University of Michigan), Hyun Min Kang(University of Michigan), Paul Anderson(University of Michigan), Tom Blackwell(University of Michigan), Fabio Busonero(University of Sassari), Christian Fuchsberger(University of Michigan), Goo Jun(University of Michigan), Andrea Maschio(University of Sassari), Eleonora Porcu(University of Sassari), Carlo Sidore(University of Sassari), Adrian Tan(University of Michigan), Mary Kate Trost(University of Michigan), David Bentley(University of Chester), Russell Grocock(University of Chester), Sean Humphray(University of Chester), Terena James(University of Chester), Zoya Kingsbury(University of Chester), Markus Bauer(University of Chester), R. Keira Cheetham(University of Chester), Tony Cox(University of Chester), Michael A. Eberle(University of Chester), Lisa Murray(University of Chester), Richard J. Shaw(University of Chester), Aravinda Chakravarti(Johns Hopkins University), Andrew G. Clark(Cornell University), Alon Keinan(Cornell University), Juan L. Rodríguez-Flores(Cornell University), Francisco M. De La Vega(Cornell University), Jeremiah D. Degenhardt(Cornell University), Evan E. Eichler(Howard Hughes Medical Institute), Paul Flicek(European Bioinformatics Institute), Laura Clarke(European Bioinformatics Institute), Rasko Leinonen(European Bioinformatics Institute), Richard E. Smith(European Bioinformatics Institute), Xiangqun Zheng-Bradley(European Bioinformatics Institute), Kathryn Beal(European Bioinformatics Institute), Fiona Cunningham(European Bioinformatics Institute), Javier Herrero(European Bioinformatics Institute), William McLaren(European Bioinformatics Institute), Graham R. S. Ritchie(European Bioinformatics Institute), Jonathan Barker(European Bioinformatics Institute), Gavin Kelman(European Bioinformatics Institute), Eugene Kulesha(European Bioinformatics Institute), Rajesh Radhakrishnan(European Bioinformatics Institute), Asier Roa(European Bioinformatics Institute), Dmitriy Smirnov(European Bioinformatics Institute), Ian Streeter(European Bioinformatics Institute), Iliana Toneva(European Bioinformatics Institute), Richard A. Gibbs(Baylor College of Medicine), Huyen Dinh(Baylor College of Medicine), Christie Kovar(Baylor College of Medicine), Sandra Lee(Baylor College of Medicine), Lora Lewis(Baylor College of Medicine), Donna M. Muzny(Baylor College of Medicine), Jeff Reid(Baylor College of Medicine), Min Wang(Baylor College of Medicine), Fuli Yu(Baylor College of Medicine), Matthew N. Bainbridge(Baylor College of Medicine), Danny Challis(Baylor College of Medicine), Uday S. Evani(Baylor College of Medicine), James T. Lu(Baylor College of Medicine), Uma Nagaswamy(Baylor College of Medicine), Aniko Sabo(Baylor College of Medicine), Yibin Wang(Baylor College of Medicine), Jin Yu(Baylor College of Medicine), Gerald Fowler(Baylor College of Medicine), Walker Hale(Baylor College of Medicine), Divya Kalra(Baylor College of Medicine), Eric D. Green(National Institutes of Health), Bartha Maria Knoppers(McGill University and Génome Québec Innovation Centre), Jan O. Korbel(European Molecular Biology Laboratory), Tobias Rausch(European Molecular Biology Laboratory), Adrian M. Sttz(European Molecular Biology Laboratory), Charles Lee(Brigham and Women's Hospital), Lauren Griffin(Brigham and Women's Hospital), Chih-Heng Hsieh(Brigham and Women's Hospital), Ryan E. Mills(Brigham and Women's Hospital), Marcin von Grotthuss(Brigham and Women's Hospital), Chengsheng Zhang(Brigham and Women's Hospital), Xinghua Shi(University of North Carolina at Charlotte), Hans Lehrach(Dynamic Systems (United States)), Ralf Sudbrak(Max Planck Institute for Molecular Genetics), Vyacheslav Amstislavskiy(Max Planck Institute for Molecular Genetics), Matthias Lienhard(Max Planck Institute for Molecular Genetics), Florian Mertes(Max Planck Institute for Molecular Genetics), Marc Sultan(Max Planck Institute for Molecular Genetics), Bernd Timmermann(Max Planck Institute for Molecular Genetics), Marie‐Laure Yaspo(Max Planck Institute for Molecular Genetics), Sudbrak(Max Planck Institute for Molecular Genetics), Ralf Herwig(Max Planck Institute for Molecular Genetics), Elaine R. Mardis(Washington University in St. Louis), Richard K. Wilson(Washington University in St. Louis), Lucinda Fulton(Washington University in St. Louis), Robert E. Fulton(Washington University in St. Louis), George M. Weinstock(Washington University in St. Louis), Asif Chinwalla(Washington University in St. Louis), Jun Li(Washington University in St. Louis), David J. Dooling(Washington University in St. Louis), Daniel C. Koboldt(Washington University in St. Louis), Michael D. McLellan(Washington University in St. Louis), John W. Wallis(Washington University in St. Louis), Michael C. Wendl(Washington University in St. Louis), Qunyuan Zhang(Washington University in St. Louis), Gábor Marth(Boston College), Erik Garrison(Boston College), Deniz Kural(Boston College), Wan-Ping Lee(Boston College), Wen Fung Leong(Boston College), Alistair Ward(Boston College), Jiantao Wu(Boston College), Mengyao Zhang(Boston College), Deborah A. Nickerson(University of Washington), Can Alkan(Bilkent University), Fereydoun Hormozdiari(University of Washington), Arthur Ko(University of Washington), Peter H. Sudmant(University of Washington), Jeanette P. Schmidt(Affymax (United States)), Christopher J. Davies(Affymax (United States)), Jeremy Gollub(Affymax (United States)), Teresa Webster(Affymax (United States)), Brant Wong(Affymax (United States)), Yiping Zhan(Affymax (United States)), Stephen T. Sherry(National Institutes of Health), Chunlin Xiao(National Institutes of Health), Deanna M. Church(National Institutes of Health), Victor Ananiev(National Institutes of Health), Zinaida Belaia(National Institutes of Health), Dimitriy Beloslyudtsev(National Institutes of Health), Nathan Bouk(National Institutes of Health), Chao Chen(National Institutes of Health), Robert Cohen(National Institutes of Health), Charles Cook(National Institutes of Health), John Garner(National Institutes of Health), Timothy Hefferon(National Institutes of Health), Mikhail Kimelman(National Institutes of Health), Chunlei Liu(National Institutes of Health), John Lopez(National Institutes of Health), Peter Meric(National Institutes of Health), Yuri Ostapchuk(National Institutes of Health), Lon Phan(National Institutes of Health), Sergiy Ponomarov(National Institutes of Health), Valérie Schneider(National Institutes of Health), Eugene Shekhtman(National Institutes of Health), Karl Sirotkin(National Institutes of Health), Douglas J. Slotta(National Institutes of Health), Hua Zhang(National Institutes of Health), Jun Wang(BGI Group (China)), Xiaodong Fang(BGI Group (China)), Xiaosen Guo(BGI Group (China)), Min Jian(BGI Group (China)), Hui Jiang(BGI Group (China)), Xin Jin(BGI Group (China)), Guoqing Li(BGI Group (China)), Jingxiang Li(BGI Group (China)), Yingrui Li(BGI Group (China)), Xiao Liu(BGI Group (China)), Yao Lu(BGI Group (China)), Xuedi Ma(BGI Group (China)), Shuaishuai Tai(BGI Group (China)), Tang Meifang(BGI Group (China)), Bo Wang(BGI Group (China)), Guangbiao Wang(BGI Group (China)), Honglong Wu(BGI Group (China)), Renhua Wu(BGI Group (China)), Ye Yin(BGI Group (China)), Wenwei Zhang(BGI Group (China)), Jiao Zhao(BGI Group (China)), Meiru Zhao(BGI Group (China)), Xiaole Zheng(BGI Group (China)), Lachlan Coin(BGI Group (China)), Lin Fang(BGI Group (China)), Qibin Li(BGI Group (China)), Zhenyu Li(BGI Group (China)), Haoxiang Lin(BGI Group (China)), Binghang Liu(BGI Group (China)), Ruibang Luo(BGI Group (China)), Haojing Shao(BGI Group (China)), Bingqiang Wang(BGI Group (China)), Yinlong Xie(BGI Group (China)), Chen Ye(BGI Group (China)), Chang Yu(BGI Group (China)), Hancheng Zheng(BGI Group (China)), Hongmei Zhu(BGI Group (China)), Hongyu Cai(BGI Group (China)), Hongzhi Cao(BGI Group (China)), Yeyang Su(BGI Group (China)), Zhongming Tian(Alacris (Germany)), Huanming Yang(BGI Group (China)), Ling Yang(Albert Einstein College of Medicine), Jiayong Zhu(Cold Spring Harbor Laboratory), Zhiming Cai(BGI Group (China)), Jian Wang(BGI Group (China)), Marcus W. Albrecht(Alacris (Germany)), Tatiana Borodina(Alacris (Germany)), Adam Auton(Zhejiang Institute of Mechanical and Electrical Engineering), Seungtai Yoon(Cold Spring Harbor Laboratory), Jayon Lihm(Cold Spring Harbor Laboratory), Vladimir Makarov(Icahn School of Medicine at Mount Sinai), Han‐Jun Jin(Dankook University), Wook Kim(Dankook University), Ki Cheol Kim(Dankook University), Srikanth Gottipati(Cornell University), D. A. Jones(Cornell University), D.N. Cooper(Cardiff University), Edward V. Ball(Cardiff University), Peter D. Stenson(Cardiff University), Bret Barnes(Illumina (United States)), Scott D. Kahn(Illumina (United States)), Kai Ye(Albert Einstein College of Medicine), Mark A. Batzer(Louisiana State University), Miriam K. Konkel(Louisiana State University), Jerilyn A. Walker(Louisiana State University), Daniel G. MacArthur(Massachusetts General Hospital), Monkol Lek(Massachusetts General Hospital), Mark D. Shriver(Pennsylvania State University), Carlos D. Bustamante(Stanford University), Simon Gravel(Stanford University), Eimear E. Kenny(Stanford University), Jeffrey M. Kidd(Stanford University), Phil Lacroute(Stanford University), Brian K. Maples(Stanford University), Andrés Moreno‐Estrada(Stanford University), Fouad Zakharia(Stanford University), Brenna M. Henn(Stanford University), Karla Sandoval(Stanford University), Jake Byrnes(University of California, San Francisco), Eran Halperin(International Computer Science Institute), Yael Baran(Tel Aviv University), David W. Craig(Translational Genomics Research Institute), Alexis Christoforides(Translational Genomics Research Institute), Tyler Izatt(Translational Genomics Research Institute), Ahmet Kurdoglu(Translational Genomics Research Institute), Shripad Sinari(Translational Genomics Research Institute), Nils Homer(Thermo Fisher Scientific (Norway)), Kevin Squire(University of California, Los Angeles), Jonathan Sebat(University of California San Diego), Vineet Bafna(University of California San Diego), Kenny Ye(Albert Einstein College of Medicine), Esteban G. Burchard(University of California, San Francisco), Ryan D. Hernandez(University of California, San Francisco), Christopher R. Gignoux(University of California, San Francisco), David Haussler(Howard Hughes Medical Institute), Sol Katzman(University of California, Santa Cruz), Wm. Kent(University of California, Santa Cruz), Bryan Howie(University of Chicago), Andrés Ruiz‐Linares(University College London), Emmanouil T. Dermitzakis(University of Geneva), Tuuli Lappalainen(University of Geneva), Scott E. Devine(Human Genome Sciences (United States)), Xinyue Liu(BGI Group (China)), Ankit Maroo(Human Genome Sciences (United States)), Luke J. Tallon(Human Genome Sciences (United States)), Jeffrey Rosenfeld(New Jersey Institute of Technology), Leslie P. Michelson(New Jersey Institute of Technology), Andrea Angius(Institute of Genetic and Biomedical Research), Francesco Cucca(University of Sassari), Serena Sanna(Institute of Genetic and Biomedical Research), Abigail W. Bigham(University of Michigan), Chris Jones(Center for Advanced Studies Research and Development in Sardinia), Fred Reinier(Center for Advanced Studies Research and Development in Sardinia), Yun Li(BGI Group (China)), Robert Lyons(University of Michigan), David Schlessinger(National Institute on Aging), Philip Awadalla(Centre Hospitalier Universitaire Sainte-Justine), Alan Hodgkinson(Centre Hospitalier Universitaire Sainte-Justine), Tarás K. Oleksyk(University of Puerto Rico-Mayaguez), Juan Carlos Martínez‐Cruzado(University of Puerto Rico-Mayaguez), Yun‐Xin Fu(Yale University), Xiaoming Liu(BGI Group (China)), Momiao Xiong(The University of Texas Health Science Center at Houston), Lynn B. Jorde(University of Utah), David J. Witherspoon(University of Utah), Jinchuan Xing(Rutgers, The State University of New Jersey), Brian L. Browning(University of Washington Medical Center), Iman Hajirasouliha(Simon Fraser University), Ken Chen(The University of Texas MD Anderson Cancer Center), Cornelis A. Albers(National Health Service), Mark Gerstein(Yale University), Alexej Abyzov(Yale University), Jieming Chen(Yale University), Yao Fu(Yale University), Lukas Habegger(Yale University), Arif Harmanci(Yale University), Xinmeng Jasmine Mu(Yale University), Cristina Sisu(Yale University), Suganthi Balasubramanian(Yale University), Mike Jin(Yale University), Ekta Khurana(Yale University), Declan Clarke(Yale University), Jacob J. Michaelson(University of California San Diego), Chris O’Sullivan(National Institutes of Health), Kathleen C. Barnes(Johns Hopkins University), Neda Gharani(Coriell Institute For Medical Research), Lorraine H. Toji(Coriell Institute For Medical Research), Norman P. Gerry(Coriell Institute For Medical Research), Jane Kaye(University of Oxford), Alastair Kent(Genetic Alliance UK (United Kingdom)), Rasika A. Mathias(Johns Hopkins University), Pilar N. Ossorio(University of Wisconsin System), Michael Parker(University of Oxford), Charles N. Rotimi(National Institutes of Health), Charmaine Royal(Duke University), Sarah A. Tishkoff(University of Pennsylvania), Marc Vía(Universitat de Barcelona), Walter F. Bodmer(John Radcliffe Hospital), Gabriel Bedoya(Universidad de Antioquia), Gao Yang(Peking University Shenzhen Hospital), Chu Jia You(Chinese Academy of Medical Sciences & Peking Union Medical College), Andrés C. García‐Montero(Universidad de Salamanca), Alberto Órfão(Universidad de Salamanca), Julie Dutil(Ponce Health Sciences University), Lisa Brooks(National Institutes of Health), Adam L. Felsenfeld(National Institutes of Health), Jean E. McEwen(National Institutes of Health), Nicholas C. Clemm(National Institutes of Health), Mark S. Guyer(National Institutes of Health), Jane L. Peterson(National Institutes of Health), Audrey Duncanson(Wellcome Trust), Michael J. Dunn(Wellcome Trust), Leena Peltonenz
Nature Communications
June 13, 2014
Cited by 455Open Access
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