A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Huixiao Hong; Tao Chen; Joseph Meehan; Jie Shen; Feng Qian; Joshua Xu; Ching-Wei Chang; Weida Tong; Roger Perkins; Jiekun Xuan; Lei Guo; Binsheng Gong; Zhenqiang Su; Wenqian Zhang; Liqing Wan; Leming Shi; Bridgett Green; Hong Fang; Weigong Ge; James C. Fuscoe; Reagan Kelly; Baitang Ning; Li-Wu Guo; Nan Mei; Yan Li; David P Kreil; Paweł P. Łabaj; Nancy Stralis‐Pavese; Peter Sykacek; Christopher E. Mason; Paul Zumbo; Jorge Gandara; Sheng Li; Christopher E. Mason; Paul Zumbo; Sheng Li; Danielle Thierry‐Mieg; Jean Thierry‐Mieg; Yang Liao; Wei Shi; Gordon K. Smyth; Wei Shi; Charles Wang; Gary P. Schroth; Robert A. Setterquist; John F. Thompson; Wendell Jones; Wenzhong Xiao; Wenzhong Xiao; Weihong Xu; Roderick V. Jensen; Ana Conesa; Joaquı́n Dopazo; Pedro Furió‐Tarí; Marco Chierici; Cesare Furlanello; Hanlin Gao; Jinhui Wang; Nadereh Jafari; Stan Letovsky; Yang Liao; Fei Lü; Xin-Xing Tan; Lee T. Szkotnicki; Edward J. Oakeley; Anita Fernandez; Frank Staedtler; Huan Gao; Ye Yin; Meihua Gong; Zhiyu Peng; Bimeng Tu; Jun Wang; Wenqian Zhang; Wen‐Wei Zhang; Yanyan Zhang; Min Jian; Zhuolin Gong; Zirui Dong; Shiyong Li; Craig A. Praul; Javier Santoyo‐López; Alicia Vela‐Boza; Javier Pérez-Florido; Francisco J. López; Javier Santoyo‐López; Andreas Scherer; Matthew Tinning; Andreas Scherer; Peng Li; Tieliu Shi; Geng Chen; Chen Zhao; Gordon K. Smyth; E. Aubrey Thompson; Jo Vandesompele; Jan Hellemans; May D. Wang; John H. Phan; Yong Yang; Jian Wang; Wenjun Bao; Russell D. Wolfinger; Tzu-Ming Chu; Li Li; Jiri Zavadil; Elisa Venturini; Jiří Zavadil; Jiri Zavadil; Jianying Li; Pierre R. Bushel; Scott S. Auerbach; Hans Binder; Thomas Blomquist; James C. Willey; Murray H. Brilliant; Ying Yu; Tao Qing; Tingting Du; Meiwen Jia; Yuanting Zheng; Weimin Cai; Jennifer Catalano; Li Li; Rong Chen; Djork-Arné Clevert; Sepp Hochreiter; Youping Deng; Adnan Derti; Viswanath Devanarayan; Joaquı́n Dopazo; Suzanne Kay; Lucille Rainbow; Yongxiang Fang; Mario Fasold; Matthias Fischer; Joost van Delft; Stan Gaj; Jos Kleinjans; Florian Caimet; Yoichi Gondo; Chao Guo; James Hadfield; Scott Schwartz; Charles D. Johnson; Samir Lababidi; Shawn Levy; Yate Ching Yuan; Yate-Ching Yuan; Bing Mu; Haiqing Li; Simon Lin; Xin Lü; Heng Luo; Xiwen Ma; Dalila B. Megherbi; Akhilesh Pandey; Akhilesh Pandey; Ryan Peters; Mehdi Pirooznia; Philippe Rocca-Serra; Susanna-Assunta Sansone; Laure Sambourg; Ruchir Shah; T. M. F. Smith; Oliver Stegle; Elia Stupka; Yutaka Suzuki; Stephen J. Walker; Wei Wang; Jun Wang; Jun Wang; Jun Wang; Eric D. Wieben; Po-Yen Wu; Zhan Ye; John H. Zhang; Ke Zhang; Yiming Zhou; David P Kreil; Leming Shi; Leming Shi; Leming Shi

doi:10.1038/nbt.2957

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Huixiao Hong(National Center for Toxicological Research), Tao Chen(National Center for Toxicological Research), Joseph Meehan(National Center for Toxicological Research), Jie Shen(National Institutes of Health), Feng Qian(National Institutes of Health), Joshua Xu(National Center for Toxicological Research), Ching-Wei Chang(National Center for Toxicological Research), Weida Tong(National Center for Toxicological Research), Roger Perkins(National Center for Toxicological Research), Jiekun Xuan(National Center for Toxicological Research), Lei Guo(National Center for Toxicological Research), Binsheng Gong(National Center for Toxicological Research), Zhenqiang Su(National Center for Toxicological Research), Wenqian Zhang(BGI Group (China)), Liqing Wan(National Center for Toxicological Research), Leming Shi(National Center for Toxicological Research), Bridgett Green(National Center for Toxicological Research), Hong Fang(National Center for Toxicological Research), Weigong Ge(City Of Hope National Medical Center), James C. Fuscoe(National Center for Toxicological Research), Reagan Kelly(Northwestern University), Baitang Ning(National Center for Toxicological Research), Li-Wu Guo(National Center for Toxicological Research), Nan Mei(National Center for Toxicological Research), Yan Li(National Center for Toxicological Research), David P Kreil(University of Warwick), Paweł P. Łabaj(Pennsylvania State University), Nancy Stralis‐Pavese(University of Edinburgh), Peter Sykacek, Christopher E. Mason(Cornell University), Paul Zumbo(The University of Melbourne), Jorge Gandara(Cornell University), Sheng Li(BGI Group (China)), Christopher E. Mason(General Electric (Spain)), Paul Zumbo(Mayo Clinic), Sheng Li(BGI Group (China)), Danielle Thierry‐Mieg(National Institutes of Health), Jean Thierry‐Mieg(National Institutes of Health), Yang Liao(SAS Institute (United States)), Wei Shi(The University of Melbourne), Gordon K. Smyth(National Institutes of Health), Wei Shi(SAS Institute (United States)), Charles Wang(Loma Linda University), Gary P. Schroth(Illumina (United States)), Robert A. Setterquist(Marshfield Clinic), John F. Thompson(National Institutes of Health), Wendell Jones(Fudan University), Wenzhong Xiao(United States Food and Drug Administration), Wenzhong Xiao(Harvard University), Weihong Xu, Roderick V. Jensen(East China Normal University), Ana Conesa(Centro de Investigacion Principe Felipe), Joaquı́n Dopazo(Instituto de Investigación de Enfermedades Raras), Pedro Furió‐Tarí(SAS Institute (United States)), Marco Chierici(Johannes Kepler University of Linz), Cesare Furlanello(Rush University Medical Center), Hanlin Gao(BGI Group (China)), Jinhui Wang(BGI Group (China)), Nadereh Jafari(Northwestern University), Stan Letovsky(Synta Pharmaceuticals (United States)), Yang Liao(The University of Melbourne), Fei Lü(General Electric (Spain)), Xin-Xing Tan (University of Liverpool), Lee T. Szkotnicki(General Electric (Spain)), Edward J. Oakeley(Novartis (Switzerland)), Anita Fernandez(Novartis (Switzerland)), Frank Staedtler(Novartis (Switzerland)), Huan Gao(BGI Group (China)), Ye Yin(BGI Group (China)), Meihua Gong(BGI Group (China)), Zhiyu Peng(BGI Group (China)), Bimeng Tu(BGI Group (China)), Jun Wang(BGI Group (China)), Wenqian Zhang(BGI Group (China)), Wen‐Wei Zhang(BGI Group (China)), Yanyan Zhang(BGI Group (China)), Min Jian(BGI Group (China)), Zhuolin Gong(BGI Group (China)), Zirui Dong(BGI Group (China)), Shiyong Li(BGI Group (China)), Craig A. Praul(Pennsylvania State University), Javier Santoyo‐López(University of Cambridge), Alicia Vela‐Boza(Institut thématique Génétique, génomique et bioinformatique), Javier Pérez-Florido(Johannes Kepler University of Linz), Francisco J. López(Fudan University), Javier Santoyo‐López(Institut thématique Génétique, génomique et bioinformatique), Andreas Scherer(Walter and Eliza Hall Institute of Medical Research), Matthew Tinning(University of Liverpool), Andreas Scherer(Walter and Eliza Hall Institute of Medical Research), Peng Li(United States Food and Drug Administration), Tieliu Shi(East China Normal University), Geng Chen(East China Normal University), Chen Zhao(SAS Institute (United States)), Gordon K. Smyth(The University of Melbourne), E. Aubrey Thompson(Jacksonville College), Jo Vandesompele(City Of Hope National Medical Center), Jan Hellemans(National Institutes of Health), May D. Wang(Emory University), John H. Phan(Nationwide Children's Hospital), Yong Yang(Eli Lilly (United States)), Jian Wang(BGI Group (China)), Wenjun Bao(University of Arkansas at Little Rock), Russell D. Wolfinger(SAS Institute (United States)), Tzu-Ming Chu (SAS Institute (United States)), Li Li(SAS Institute (United States)), Jiri Zavadil (NYU Langone Health), Elisa Venturini(City Of Hope National Medical Center), Jiří Zavadil(NYU Langone Health), Jiri Zavadil(Johns Hopkins University), Jianying Li(National Institute of Environmental Health Sciences), Pierre R. Bushel(National Institute of Environmental Health Sciences), Scott S. Auerbach(National Institute of Environmental Health Sciences), Hans Binder(Emory University), Thomas Blomquist(University of Toledo Medical Center), James C. Willey(University of Toledo Medical Center), Murray H. Brilliant(Marshfield Clinic), Ying Yu(University of Liverpool), Tao Qing(Fudan University), Tingting Du(Fudan University), Meiwen Jia(Fudan University), Yuanting Zheng(Fudan University), Weimin Cai(Fudan University), Jennifer Catalano(Center for Biologics Evaluation and Research), Li Li(SAS Institute (United States)), Rong Chen(Icahn School of Medicine at Mount Sinai), Djork-Arné Clevert (Johannes Kepler University of Linz), Sepp Hochreiter(Johannes Kepler University of Linz), Youping Deng(Rush University), Adnan Derti(Novartis (Switzerland)), Viswanath Devanarayan(AbbVie (United States)), Joaquı́n Dopazo(Instituto de Investigación de Enfermedades Raras), Suzanne Kay(University of Liverpool), Lucille Rainbow(University of Liverpool), Yongxiang Fang(University of Liverpool), Mario Fasold(Wake Forest University), Matthias Fischer(University of Cologne), Joost van Delft(Princeton University), Stan Gaj(City Of Hope National Medical Center), Jos Kleinjans(University of Copenhagen), Florian Caimet(Mayo Clinic), Yoichi Gondo(RIKEN BioResource Research Center), Chao Guo(City Of Hope National Medical Center), James Hadfield(University of Cambridge), Scott Schwartz(Eli Lilly (United States)), Charles D. Johnson(Marshfield Clinic), Samir Lababidi(Computer Technology Associates (United States)), Shawn Levy(Fudan University), Yate Ching Yuan(City Of Hope National Medical Center), Yate-Ching Yuan(City Of Hope National Medical Center), Bing Mu(City Of Hope National Medical Center), Haiqing Li(City Of Hope National Medical Center), Simon Lin(Nationwide Children's Hospital), Xin Lü(AbbVie (United States)), Heng Luo(University of Arkansas at Little Rock), Xiwen Ma(Eli Lilly (United States)), Dalila B. Megherbi(University of Massachusetts Lowell), Akhilesh Pandey(Johns Hopkins University), Akhilesh Pandey(Johns Hopkins University), Ryan Peters(University of Warwick), Mehdi Pirooznia(Johns Hopkins University), Philippe Rocca-Serra(University of Oxford), Susanna-Assunta Sansone(University of Oxford), Laure Sambourg(Centre National de la Recherche Scientifique), Ruchir Shah(SRA International (United States)), T. M. F. Smith(Gediz University), Oliver Stegle(European Bioinformatics Institute), Elia Stupka, Yutaka Suzuki(Chiba University), Stephen J. Walker(Wake Forest University), Wei Wang(Princeton University), Jun Wang(BGI Group (China)), Jun Wang(BGI Group (China)), Jun Wang(BGI Group (China)), Eric D. Wieben(Mayo Clinic), Po-Yen Wu(Georgia Institute of Technology), Zhan Ye(Marshfield Clinic), John H. Zhang(Zhejiang University of Technology), Ke Zhang(University of North Dakota), Yiming Zhou(Digizyme (United States)), David P Kreil(University of Warwick), Leming Shi(National Center for Toxicological Research), Leming Shi(National Center for Toxicological Research), Leming Shi(National Center for Toxicological Research)

Nature Biotechnology

August 21, 2014

10.1038/nbt.2957

Cited by 1,066Open Access

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