Remediation of the protein data bank archive

K. Henrick(Rutgers, The State University of New Jersey), Zukang Feng(Rutgers, The State University of New Jersey), Wolfgang F. Bluhm(Rutgers, The State University of New Jersey), Dimitris Dimitropoulos(Rutgers, The State University of New Jersey), Jurgen F. Doreleijers(Rutgers, The State University of New Jersey), Shuchismita Dutta(Rutgers, The State University of New Jersey), J.L. Flippen-Anderson(Rutgers, The State University of New Jersey), John Ionides(Rutgers, The State University of New Jersey), C. Kamada(Rutgers, The State University of New Jersey), Eugene Krissinel(Rutgers, The State University of New Jersey), Catherine L. Lawson(Rutgers, The State University of New Jersey), John L. Markley(Rutgers, The State University of New Jersey), Haruki Nakamura(Rutgers, The State University of New Jersey), Richard Newman(Rutgers, The State University of New Jersey), Yusuke Shimizu(Rutgers, The State University of New Jersey), G. Jawahar Swaminathan(Rutgers, The State University of New Jersey), Sameer Velankar(Rutgers, The State University of New Jersey), Jeramia Ory(Rutgers, The State University of New Jersey), Eldon L. Ulrich(Rutgers, The State University of New Jersey), Wim Vranken(Rutgers, The State University of New Jersey), John Westbrook(Rutgers, The State University of New Jersey), Reiko Yamashita(Rutgers, The State University of New Jersey), H. Yang(Rutgers, The State University of New Jersey), Jasmine Young(Rutgers, The State University of New Jersey), Muhammed Yousufuddin(Rutgers, The State University of New Jersey), Helen M. Berman(Rutgers, The State University of New Jersey)
Nucleic Acids Research
December 12, 2007
10.1093/nar/gkm937
Cited by 139Open Access
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Abstract

The Worldwide Protein Data Bank (wwPDB; wwpdb.org) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive at ftp://ftp.wwpdb.org is the repository for the coordinates and related information for more than 47 000 structures, including proteins, nucleic acids and large macromolecular complexes that have been determined using X-ray crystallography, NMR and electron microscopy techniques. The members of the wwPDB-RCSB PDB (USA), MSD-EBI (Europe), PDBj (Japan) and BMRB (USA)-have remediated this archive to address inconsistencies that have been introduced over the years. The scope and methods used in this project are presented.

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