The genome of the model beetle and pest Tribolium castaneum

Margaret Morgan(Human Genome Sciences (United States)),  Mimi N. Chandrabose(Human Genome Sciences (United States)),  Sandra Hines(Human Genome Sciences (United States)),  San-Juana Ruiz(Human Genome Sciences (United States)),  Sandra Lee(Human Genome Sciences (United States)), Brian Schneider(Human Genome Sciences (United States)),  Courtney S. White(Human Genome Sciences (United States)),  Henry Song(Human Genome Sciences (United States)),  Shalini N. Jhangiani(Human Genome Sciences (United States)), Tony Attaway(Human Genome Sciences (United States)),  Richard Gibbs(Human Genome Sciences (United States)),  Stephanie Bell(Human Genome Sciences (United States)),  Richard A. Gibbs(Human Genome Sciences (United States)), Jennifer Hume(Human Genome Sciences (United States)),  Lora R. Lewis(Human Genome Sciences (United States)),  Donna Villasana(Human Genome Sciences (United States)),  Erica Sodergren(Human Genome Sciences (United States)),  Stephen Richards(Human Genome Sciences (United States)), Marvin Dao(Human Genome Sciences (United States)),  Selina Vattahil(Human Genome Sciences (United States)),  Jireh Santibanez(Human Genome Sciences (United States)),  Huyen Dinh(Human Genome Sciences (United States)), Stephen Richards(Human Genome Sciences (United States)), Vandita Joshi(Human Genome Sciences (United States)), Andrew Cree(Human Genome Sciences (United States)),  Rita Wright(Human Genome Sciences (United States)), Ziad Khan(Human Genome Sciences (United States)), Clay Davis(Human Genome Sciences (United States)),  George Weinstock(Human Genome Sciences (United States)), Ngoc B. Nguyen(Human Genome Sciences (United States)), Judith Hernandez(Human Genome Sciences (United States)),  Christie Kovar(Broad Institute), Lynne V. Nazareth(Human Genome Sciences (United States)),  Dean Chavez(Human Genome Sciences (United States)),  Kerstin P. Clerk-Blankenburg(Human Genome Sciences (United States)),  Shannon Dugan-Rocha(Human Genome Sciences (United States)), Geoffrey Okwuonu(Human Genome Sciences (United States)), Christian Buhay(Human Genome Sciences (United States)), Donna M. Muzny(Human Genome Sciences (United States)),  Toni T. Garner(Human Genome Sciences (United States)),  Steven E. Scherer(Human Genome Sciences (United States)), Lan Zhang(Human Genome Sciences (United States)),  George M. Weinstock(Human Genome Sciences (United States)),  Gerald Fowler(Human Genome Sciences (United States)), LaRonda Jackson(Human Genome Sciences (United States)), Kim C. Worley(Human Genome Sciences (United States)), Yue Liu(Human Genome Sciences (United States)),  Andrea Kowis(Human Genome Sciences (United States)),  Joseph Chacko(Human Genome Sciences (United States)), Alica Hawes(Human Genome Sciences (United States)), David L. Parker(Human Genome Sciences (United States)),  Michael Holder(Human Genome Sciences (United States)), Margaret Morgan(Human Genome Sciences (United States)),  Mimi N. Chandrabose(Human Genome Sciences (United States)),  Sandra Hines(Human Genome Sciences (United States)),  San-Juana Ruiz(Human Genome Sciences (United States)),  Sandra Lee(Human Genome Sciences (United States)), Brian Schneider(Human Genome Sciences (United States)),  Courtney S. White(Human Genome Sciences (United States)),  Henry Song(Human Genome Sciences (United States)),  Shalini N. Jhangiani(Human Genome Sciences (United States)), Tony Attaway(Human Genome Sciences (United States)),  Richard Gibbs(Human Genome Sciences (United States)),  Stephanie Bell(Human Genome Sciences (United States)),  Richard A. Gibbs(Human Genome Sciences (United States)), Jennifer Hume(Human Genome Sciences (United States)),  Lora R. Lewis(Human Genome Sciences (United States)),  Donna Villasana(Human Genome Sciences (United States)),  Erica Sodergren(Human Genome Sciences (United States)),  Stephen Richards(Human Genome Sciences (United States)), Marvin Dao(Human Genome Sciences (United States)),  Selina Vattahil(Human Genome Sciences (United States)),  Jireh Santibanez(Human Genome Sciences (United States)),  Huyen Dinh(Human Genome Sciences (United States)), Stephen Richards(Human Genome Sciences (United States)), Vandita Joshi(University of California, Riverside), Andrew Cree(Human Genome Sciences (United States)),  Rita Wright(Human Genome Sciences (United States)), Ziad Khan(Human Genome Sciences (United States)), Clay Davis(Human Genome Sciences (United States)),  George Weinstock(Human Genome Sciences (United States)), Ngoc B. Nguyen(Human Genome Sciences (United States)), Judith Hernandez(Human Genome Sciences (United States)),  Christie Kovar(Human Genome Sciences (United States)), Lynne V. Nazareth(Human Genome Sciences (United States)),  Dean Chavez(Human Genome Sciences (United States)),  Kerstin P. Clerk-Blankenburg(Human Genome Sciences (United States)),  Shannon Dugan-Rocha(Human Genome Sciences (United States)), Geoffrey Okwuonu(Human Genome Sciences (United States)), Christian Buhay(Human Genome Sciences (United States)), Donna M. Muzny(Human Genome Sciences (United States)),  Toni T. Garner(Human Genome Sciences (United States)),  Steven E. Scherer(Human Genome Sciences (United States)), Lan Zhang(Human Genome Sciences (United States)),  George M. Weinstock(Human Genome Sciences (United States)),  Gerald Fowler(Human Genome Sciences (United States)), LaRonda Jackson(Human Genome Sciences (United States)), Kim C. Worley(Human Genome Sciences (United States)), Yue Liu(Human Genome Sciences (United States)),  Andrea Kowis(Human Genome Sciences (United States)),  Joseph Chacko(Human Genome Sciences (United States)), Alica Hawes(Human Genome Sciences (United States)), David L. Parker(Human Genome Sciences (United States)),  Michael Holder(Human Genome Sciences (United States)), Sherry Miller(National Institutes of Health),  Susan Brown(National Institutes of Health), Susan J. Brown(GlaxoSmithKline (United Kingdom)), Suzhi Wang(Kansas State University), Cassondra M. Gordon(University of Geneva),  Yoshinori Tomoyasu(University of Geneva), Renata Bolognesi(Kansas State University), Jeremy L. Marshall(Kansas State University),  Marce Lorenzen(Agricultural Marketing Service),  Robin Denell(Wayne State University), Teresa D. Shippy(Kansas State University),  Susan J. Brown(Kansas State University),  Yoshinori Tomoyasu (Kansas State University),  Robin E. Denell(Kansas State University), Liangjiang Wang(Kansas State University), Jeff Lord(Agricultural Marketing Service),  Karl J. Kramer(Agricultural Marketing Service), Brenda Oppert(Agricultural Marketing Service), Richard W. Beeman(Agricultural Marketing Service),  Richard W. Beeman (Agricultural Marketing Service),  Marce Lorenzen(Agricultural Marketing Service), Cris Oppert(Agricultural Marketing Service),  Yasuyuki Arakane(Agricultural Marketing Service),  Richard W. Beeman(Agricultural Marketing Service), Gregor Bucher(University of Cologne), Franck Simonnet(Washington University in St. Louis), Ernst A. Wimmer(University of Göttingen), Nico Posnien(University of Cologne), Johannes B. Schinko(University of Cologne), Stefan Schuetz(University of Cologne), Daniela Großmann(University of Göttingen), Gregor Bucher(University of Göttingen), M. Friedrich(Friedrich-Alexander-Universität Erlangen-Nürnberg), M. Friedrich(Friedrich-Alexander-Universität Erlangen-Nürnberg), Riyue Bao(Wayne State University), Xiaoyun Yang(Wayne State University), Giuseppe Cazzamali(University of Copenhagen), Cornelis J.P. Grimmelikhuijzen(University of Copenhagen), Cornelis J.P. Grimmelikhuijzen(University of Copenhagen), Michael R. Williamson(University of Copenhagen), Frank Hauser(University of Copenhagen), Martin Klingler(Friedrich-Alexander-Universität Erlangen-Nürnberg), Jochen Trauner(Friedrich-Alexander-Universität Erlangen-Nürnberg), Michael Schoppmeier(Friedrich-Alexander-Universität Erlangen-Nürnberg), Martin Klingler(Friedrich-Alexander-Universität Erlangen-Nürnberg), Christian Schmitt(Friedrich-Alexander-Universität Erlangen-Nürnberg), Jeremy Lynch(The University of Queensland), Siegfried Roth(University of Tennessee Health Science Center), Rodrigo Nunes da Fonseca(University of Cologne), Siegfried Roth(University of Cologne), Cornelia Von Levetsow(University of Cologne), Reinhard Schröder(Kansas State University), Nadine Wittkopp(Kansas State University), Rebekka Lutz(Kansas State University), Rolf Reuter(Kansas State University), Reinhard Schröder(Oklahoma State University), Nicola Berns(Oklahoma State University), Anke Beermann(Kansas State University), Henrique Marques‐Souza(TH Köln - University of Applied Sciences), Maurijn van der Zee(TH Köln - University of Applied Sciences), Manuel Aranda(TH Köln - University of Applied Sciences),  Diethard Tautz (TH Köln - University of Applied Sciences), Joël Savard(TH Köln - University of Applied Sciences),  Diethard Tautz(TH Köln - University of Applied Sciences), Diethard Tautz(TH Köln - University of Applied Sciences), Evgeny M. Zdobnov(University of Geneva), Evgenia V. Kriventseva(University of Geneva),  Evgeny M. Zdobnov(University of Geneva), Stefan Wyder(University of Geneva), Stefan Wyder(University of Geneva),  Evgeny M. Zdobnov(University of Geneva),  Evgeny M. Zdobnov (University of Geneva), Evgeny M. Zdobnov(University of Geneva), Robert M. Waterhouse(Kansas State University),  Evgeny M. Zdobnov (University of Geneva), Evgeny M. Zdobnov(University of Geneva), Evgeny M. Zdobnov(University of Geneva), Jeffrey Garnes(Broad Institute), Andreas Gnirke(University of California, Davis), Jon Margolis(University of California, Davis), Bin Li(University of Illinois Urbana-Champaign), Yoonseong Park(Kansas State University),  Yoonseong Park(Australian National University),  Yoonseong Park (Kansas State University), Justin Reese(Australian National University), Christine G. Elsik(Kansas State University), Giddy Landan(University of Houston), Eran Elhaik(University of Houston), Dan Graur(University of Houston), Peter W. Atkinson(University of California, Riverside), Peter Arensburger(University of California, Riverside), Zhijian Tu(Virginia Tech), Jim Beidler(Virginia Tech), Jeffery P. Demuth(The University of Texas at Arlington), Douglas W. Drury(Indiana University Bloomington), Yu-Zhou Du (Yangzhou University),  Jian-jun Wang(Yangzhou University), Mizuko Osanai(The University of Tokyo), Haruhiko Fujiwara(The University of Tokyo), Vincenza Maselli(Telethon Institute Of Genetics And Medicine), Kimberly K. O. Walden(University of Illinois Urbana-Champaign), Hugh M. Robertson(University of Illinois Urbana-Champaign), Hugh M. Robertson(University of Illinois Urbana-Champaign), Mario Stanke(University of Göttingen), Doreen Werner(University of Göttingen), Burkhard Morgenstern(University of Göttingen), Victor Solovyev(Royal Holloway University of London), Peter Kosarev(Northern Westchester Hospital), Garth Brown(National Center for Biotechnology Information), Paul Kitts(National Center for Biotechnology Information), Boris Kiryutin(National Center for Biotechnology Information), Yuri Kapustin(National Center for Biotechnology Information), Donna Maglott(National Center for Biotechnology Information), Kim D. Pruitt(National Center for Biotechnology Information), Wratko Hlavina(National Center for Biotechnology Information), Victor Sapojnikov(National Center for Biotechnology Information), Olga Ermolaeva(National Center for Biotechnology Information),  Hsiu-Chuan Chen(National Center for Biotechnology Information), Alexandre Souvorov(National Center for Biotechnology Information), Aaron J. Mackey(GlaxoSmithKline (United States)), Evgenia V. Kriventseva(University of Geneva), Tatsuhiko Kadowaki(Nagoya University), Florian Raible(European Molecular Biology Laboratory), Peer Bork(Max Delbrück Center),  Peer Bork(Max Delbrück Center),  Peer Bork(Max Delbrück Center), Peer Bork (Max Delbrück Center), François Bonneton(Université Claude Bernard Lyon 1), Vincent Laudet(Université Claude Bernard Lyon 1), Daniel Bopp(University of Zurich), David Ferrier(Oxford Research Group), Thomas Butts(Oxford Research Group), Arnaud Chaumot(Laboratoire des Matériaux Avancés), Marek Jindra(Institute of Entomology), Que Lan(University of Wisconsin System), H. Michael G. Lattorff(Martin Luther University Halle-Wittenberg), Zhenyi Liu(Washington University in St. Louis), Michel Vervoort(Centre National de la Recherche Scientifique), David B. Sattelle(University of Oxford), Andrew K. Jones(University of Oxford), Paul R. Ebert(The University of Queensland), David R. Nelson(University of Tennessee Health Science Center), Jeffrey G. Scott(Cornell University), David G. Hogenkamp(Kansas State University), Radhika Dixit(Kansas State University), Subbaratnam Muthukrishnan(Kansas State University),  Karl J. Kramer(Agricultural Marketing Service), Qingsong Zhu(Kansas State University),  Yasuyuki Arakane(Agricultural Marketing Service), Picheng Zhao(Oklahoma State University), Haobo Jiang(Oklahoma State University), Zhen Zou(Oklahoma State University), Haobo Jiang(Oklahoma State University), Zhiqiang Lu(Oklahoma State University), Niranji Sumathipala(Oklahoma State University), Elena N. Elpidina(Lomonosov Moscow State University), Konstantin S. Vinokurov(Lomonosov Moscow State University), Jay D. Evans(Agricultural Research Service), Boran Altincicek(Justus-Liebig-Universität Gießen), Andreas Vilcinskas(Justus-Liebig-Universität Gießen), Dan Hultmark(Umeå University), Michael J. Williams(Umeå University), Charles Hétru(Centre National de la Recherche Scientifique), Yoshiaki Tanaka(Institute of Agrobiological Sciences), Reinhard Predel(Ernst Abbe University of Applied Sciences Jena), Susanne Neupert(Ernst Abbe University of Applied Sciences Jena), Joachim Schachtner(Philipps University of Marburg), Peter Verleyen(KU Leuven), Sergio Angeli(Nordwestdeutsche Forstliche Versuchsanstalt), Ryszard Maleszka(Australian National University), Sylvain Forêt(Australian National University)
Nature
March 23, 2008
Cited by 1,429Open Access
Full Text

Abstract

Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell–cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control. The red flour beetle Tribolium castaneum is a common pest: a type of 'bran bug', it targets cereal products, including grain, flour and rice bran. It is also a commonly used laboratory model, combining the ease of systematic RNA interference experiments such as those used with the nematode worm C. elegans with a biology that is more representative of most insects than even Drosophila. This weeks sees the publication by the Tribolium Genome Sequencing Consortium of the genomic sequence of T. castaneum. This is the first beetle genome to be published, and it will be a valuable resource for insect development studies and pest biology. The beetle Tribolium castaneum is a commonly used laboratory model, combining the ease of systematic RNAi experiments like those in Caenorhabditis elegans, with biology that is more representative of most insects than Drosophila melanogaster. A large consortium has sequenced and analysed the genome of the red flour beetle, creating a resource for biologists everywhere.


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