Metadata matters: access to image data in the real world

Melissa Linkert(University of Wisconsin–Madison), Curtis Rueden(University of Wisconsin–Madison), Chris Allan(University of Dundee), Jean‐Marie Burel(University of Dundee), William J. Moore(University of Dundee), Andrew Patterson(University of Dundee), Brian Loranger(University of Dundee), Josh Moore, Carlos Neves, Donald MacDonald(University of Dundee), Aleksandra Tarkowska(University of Dundee), Caitlin Sticco(University of Wisconsin–Madison), Emma Hill(Rockefeller University Press), Mike Rossner(Rockefeller University Press), Kevin W. Eliceiri(University of Wisconsin–Madison), Jason R. Swedlow(University of Dundee)
The Journal of Cell Biology
May 31, 2010
Cited by 1,099Open Access
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Abstract

Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository.


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