The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. Schnable(Iowa State University), Doreen Ware(Cold Spring Harbor Laboratory), Robert S. Fulton(Washington University in St. Louis), Joshua C. Stein(Cold Spring Harbor Laboratory), Fusheng Wei(University of Arizona), Shiran Pasternak(Cold Spring Harbor Laboratory), Chengzhi Liang(Cold Spring Harbor Laboratory), Jianwei Zhang(University of Arizona), Lucinda Fulton(Washington University in St. Louis), Tina Graves(Washington University in St. Louis), Patrick Minx(Washington University in St. Louis), Amy Denise Reily(Washington University in St. Louis), Laura Courtney(Washington University in St. Louis), Scott Kruchowski(Washington University in St. Louis), Chad Tomlinson(Washington University in St. Louis), Cindy Strong(Washington University in St. Louis), Kim D. Delehaunty(Washington University in St. Louis), Catrina C. Fronick(Washington University in St. Louis), Bill Courtney(Washington University in St. Louis), Susan M. Rock(Washington University in St. Louis), Eddie Belter(Washington University in St. Louis), Feiyu Du(Washington University in St. Louis), Kyung Kim(Washington University in St. Louis), Rachel M. Abbott(Washington University in St. Louis), Marc Cotton(Washington University in St. Louis), Andy Levy(Washington University in St. Louis), Pamela Marchetto(Washington University in St. Louis), Kerri Ochoa(Washington University in St. Louis), Stephanie Jackson(Washington University in St. Louis), Barbara Gillam(Washington University in St. Louis), Weizu Chen(Washington University in St. Louis), Le Yan(Washington University in St. Louis), Jamey Higginbotham(Washington University in St. Louis), Marco Cardenas(Washington University in St. Louis), Jason Waligorski(Washington University in St. Louis), Elizabeth Applebaum(Washington University in St. Louis), Lindsey Phelps(Washington University in St. Louis), Jason Falcone(Washington University in St. Louis), Krishna Kanchi(Washington University in St. Louis), Thynn Thane(Washington University in St. Louis), Adam Scimone(Washington University in St. Louis), Nay Thane(Washington University in St. Louis), Jessica Henke(Washington University in St. Louis), Tom Wang(Washington University in St. Louis), Jessica Ruppert(Washington University in St. Louis), Neha Shah(Washington University in St. Louis), Kelsi Rotter(Washington University in St. Louis), Jennifer Hodges(Washington University in St. Louis), Elizabeth Ingenthron(Washington University in St. Louis), M. Cordes(Washington University in St. Louis), Sara Kohlberg(Washington University in St. Louis), Jennifer Sgro(Washington University in St. Louis), Brandon Delgado(Washington University in St. Louis), Kelly Mead(Washington University in St. Louis), Asif Chinwalla(Washington University in St. Louis), Shawn Leonard(Washington University in St. Louis), Kevin Crouse(Washington University in St. Louis), Kristi Collura(University of Arizona), Dave Kudrna(University of Arizona), Jennifer Currie(University of Arizona), Ruifeng He(University of Arizona), Angelina Angelova(University of Arizona), Shanmugam Rajasekar(University of Arizona), Teri Mueller(University of Arizona), Rene Lomeli(University of Arizona), Gabriel Scara(University of Arizona), Ara Ko(University of Arizona), Krista Delaney(University of Arizona), Marina Wissotski(University of Arizona), Georgina Espinosa López(University of Arizona), David Campos(University of Arizona), Michele Braidotti(University of Arizona), Elizabeth Ashley(University of Arizona), Wolfgang Golser(University of Arizona), Hye‐Ran Kim(University of Arizona), Seunghee Lee(University of Arizona), Jinke Lin(University of Arizona), Zeljko Dujmic(University of Arizona), Woojin Kim(University of Arizona), Jayson Talag(University of Arizona), Andrea Zuccolo(University of Arizona), Chuanzhu Fan(University of Arizona), Aswathy Sebastian(University of Arizona), Melissa Kramer(Cold Spring Harbor Laboratory), Lori Spiegel(Cold Spring Harbor Laboratory), Lidia U. Nascimento(Cold Spring Harbor Laboratory), Theresa Zutavern(Cold Spring Harbor Laboratory), Beth A. Miller(Cold Spring Harbor Laboratory), Claude Ambroise(Cold Spring Harbor Laboratory), Stéphanie Muller(Cold Spring Harbor Laboratory), Will Spooner(Cold Spring Harbor Laboratory), Apurva Narechania(Cold Spring Harbor Laboratory), Liya Ren(Cold Spring Harbor Laboratory), Sharon Wei(Cold Spring Harbor Laboratory), Sunita Kumari(Cold Spring Harbor Laboratory), Ben Faga(Cold Spring Harbor Laboratory), Michael J. Levy(Cold Spring Harbor Laboratory), Linda McMahan(Cold Spring Harbor Laboratory), Peter Van Buren(Cold Spring Harbor Laboratory), Matthew Vaughn(Cold Spring Harbor Laboratory), Kai Ying(Iowa State University), Cheng‐Ting Yeh(Iowa State University), Scott Emrich(University of Notre Dame), Yi Jia(Iowa State University), Ananth Kalyanaraman(University of Iowa), An‐Ping Hsia(Iowa State University), W. Brad Barbazuk(University of Florida), Regina S. Baucom(University of Georgia), Thomas P. Brutnell(Cornell University), Nicholas C. Carpita(Purdue University West Lafayette), Cristian Chaparro(Centre National de la Recherche Scientifique), Jer-Ming Chia(Cold Spring Harbor Laboratory), Jean‐Marc Deragon(Centre National de la Recherche Scientifique), James C. Estill(University of Georgia), Yan Fu(Iowa State University), Jeffrey A. Jeddeloh(University of Wisconsin–Madison), Yujun Han(University of Georgia), Hyeran Lee(University of Wisconsin–Madison), Pinghua Li(Cornell University), Damon Lisch(Lawrence Berkeley National Laboratory), Sanzhen Liu(Iowa State University), Zhijie Liu(Cold Spring Harbor Laboratory), Dawn H. Nagel(University of Georgia), Maureen C. McCann(State Street (United States)), Phillip SanMiguel(Purdue University West Lafayette), Alan M. Myers(Iowa State University), Dan Nettleton(Iowa State University), John D. Nguyen(University of Southern California), Bryan W. Penning(Purdue University West Lafayette), Lalit Ponnala(Cornell University), Kevin Schneider(University of Hawaii System), David C. Schwartz(University of Wisconsin–Madison), Anupma Sharma(University of Hawaii System), Carol Soderlund(University of Arizona), Nathan M. Springer(University of Minnesota), Qi Sun(Cornell University), Hao Wang(University of Georgia), Michael S. Waterman(University of Southern California), Richard P. Westerman(Purdue University West Lafayette), Thomas Wolfgruber(University of Hawaii System), Lixing Yang(University of Georgia), Yeisoo Yu(University of Arizona), Lifang Zhang(Cold Spring Harbor Laboratory), Shiguo Zhou(University of Wisconsin–Madison), Qihui Zhu(University of Georgia), Jeffrey L. Bennetzen(University of Georgia), R. Kelly Dawe(University of Georgia), Jiming Jiang(University of Wisconsin–Madison), Ning Jiang(Michigan State University), Gernot G. Presting(University of Hawaii System), Susan R. Wessler(University of Georgia), Srinivas Aluru(Indian Institute of Technology Bombay), Robert A. Martienssen(Cold Spring Harbor Laboratory), Sandra W. Clifton(Washington University in St. Louis), W. Richard McCombie(Cold Spring Harbor Laboratory), Rod A. Wing(University of Arizona), Richard K. Wilson(Washington University in St. Louis)
Science
November 20, 2009
Cited by 4,207

Abstract

A-Maize-ing Maize is one of our oldest and most important crops, having been domesticated approximately 9000 years ago in central Mexico. Schnable et al. (p. 1112 ; see the cover) present the results of sequencing the B73 inbred maize line. The findings elucidate how maize became diploid after an ancestral doubling of its chromosomes and reveals transposable element movement and activity and recombination. Vielle-Calzada et al. (p. 1078 ) have sequenced the Palomero Toluqueño ( Palomero ) landrace, a highland popcorn from Mexico, which, when compared to the B73 line, reveals multiple loci impacted by domestication. Swanson-Wagner et al. (p. 1118 ) exploit possession of the genome to analyze expression differences occurring between lines. The identification of single nucleotide polymorphisms and copy number variations among lines was used by Gore et al. (p. 1115 ) to generate a Haplotype map of maize. While chromosomal diversity in maize is high, it is likely that recombination is the major force affecting the levels of heterozygosity in maize. The availability of the maize genome will help to guide future agricultural and biofuel applications (see the Perspective by Feuillet and Eversole ).


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