Streaming fragment assignment for real-time analysis of sequencing experimentsAdam Roberts(University of California, Berkeley), Lior Pachter(University of California, Berkeley)Nature MethodsNovember 18, 201210.1038/nmeth.2251Cited by 1,133Open AccessFull TextSaveCiteExport RISWatch citationsAbstractRelated PapersRSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBo Li, Colin N. Dewey|BMC Bioinformatics|2011|23.3kUltrafast and memory-efficient alignment of short DNA sequences to the human genomeBen Langmead, Cole Trapnell, Mihai Pop et al.|Genome biology|2009|22.9kTranscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationCole Trapnell, Brian A. Williams, Geo Pertea et al.|Nature Biotechnology|2010|16.4kDifferential expression analysis for sequence count dataSimon Anders, Wolfgang Huber|Genome biology|2010|16.4kDifferential analysis of gene regulation at transcript resolution with RNA-seqCole Trapnell, David G. Hendrickson, Martin Sauvageau et al.|Nature Biotechnology|2012|3.7k