Leaderboards/vaccines and immunoinformatics approaches

vaccines and immunoinformatics approaches

Last updated July 15, 2026

Rising Stars

Fresh ink, massive impact

Papers

ToxinPred 3.0: An improved method for predicting the toxicity of peptides

Computers in Biology and Medicine|2024

232 cit.

GNINA 1.3: the next increment in molecular docking with deep learning

Journal of Cheminformatics|2025

105 cit.

Addressing the antibody germline bias and its effect on language models for improved antibody design

Bioinformatics|2024

57 cit.

Prediction of hemolytic peptides and their hemolytic concentration

Communications Biology|2025

46 cit.

Publication in Frontiers in Immunology (2025) [18 citations, W4413033903]

Frontiers in Immunology|2025

18 cit.

Discovery of the Clinical Candidate <b>S-892216</b> : A Second-Generation of SARS-CoV-2 3CL Protease Inhibitor for Treating COVID-19

Journal of Medicinal Chemistry|2025

14 cit.

A large language model for predicting neurotoxic peptides and neurotoxins

Protein Science|2025

5 cit.

Publication in ImmunoInformatics (2024) [2 citations, W4391222295]

ImmunoInformatics|2024

2 cit.

Open-ComBind: Harnessing unlabeled data for improved binding pose prediction

Biophysical Journal|2024

0 cit.

Publication in Open MIND (2026) [W7155500922]

Open MIND|2026

0 cit.

Emerging Leaders

Drafting the new consensus

Papers

Machine learning for antimicrobial peptide identification and design

Nature Reviews Bioengineering|2024

219 cit.

A cytosolic surveillance mechanism activates the mitochondrial UPR

Nature|2023

188 cit.

Deep-learning-enabled antibiotic discovery through molecular de-extinction

Nature Biomedical Engineering|2024

156 cit.

Molecular de-extinction of ancient antimicrobial peptides enabled by machine learning

Cell Host & Microbe|2023

145 cit.

Mining human microbiomes reveals an untapped source of peptide antibiotics

Cell|2024

145 cit.

Autonomous Treatment of Bacterial Infections <i>in Vivo</i> Using Antimicrobial Micro- and Nanomotors

ACS Nano|2022

111 cit.

Protein import motor complex reacts to mitochondrial misfolding by reducing protein import and activating mitophagy

Nature Communications|2022

85 cit.

The oncogenic fusion protein DNAJB1-PRKACA can be specifically targeted by peptide-based immunotherapy in fibrolamellar hepatocellular carcinoma

Nature Communications|2022

76 cit.

AMYPred-FRL is a novel approach for accurate prediction of amyloid proteins by using feature representation learning

Scientific Reports|2022

74 cit.

Durable spike-specific T cell responses after different COVID-19 vaccination regimens are not further enhanced by booster vaccination

Science Immunology|2022

73 cit.

Current Senior Leaders

Wrote the book, still writing it

Researchers

Alessandro Sette

La Jolla Institute for Immunology

Morten Nielsen

Technical University of Denmark

Gajendra P. S. Raghava

Indraprastha Institute of Information Technology Delhi

Bjoern Peters

La Jolla Institute for Immunology

Jesse D. Bloom

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Shane Crotty

La Jolla Institute for Immunology

Adolfo García‐Sastre

Office of Infectious Diseases

Nevan J. Krogan

QB3

Nicholas P. Restifo

Lyell Immunopharma (United States)

Kevan M. Shokat

University of California San Francisco Medical Center

Papers

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

Nature|2020

4.9k cit.

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

Cell|2020

4k cit.

Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection

Science|2021

3k cit.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

Nature|2006

3k cit.

Cancer immunotherapy: moving beyond current vaccines

Nature Medicine|2004

3k cit.

K-Ras(G12C) inhibitors allosterically control GTP affinity and effector interactions

Nature|2013

2.5k cit.

NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

Nucleic Acids Research|2020

2.3k cit.

The Immune Epitope Database (IEDB): 2018 update

Nucleic Acids Research|2018

2.3k cit.

Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding

Cell|2020

2.2k cit.

In Silico Approach for Predicting Toxicity of Peptides and Proteins

PLoS ONE|2013

2k cit.

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