Leaderboards/Genome Rearrangement Algorithms

Genome Rearrangement Algorithms

Last updated July 7, 2026

Rising Stars

New and hot

Rising Stars Researchers

1
Neng Huang
Harvard University
2
Andrea Guarracino
University of Tennessee Health Science Center
3
Hamza Išerić
University of Maryland, College Park
4
Yan Wong
Beijing Institute of Big Data Research
5
Leonard Bohnenkämper
Bielefeld University
6
Gabriel Siqueira
Universidade Estadual de Campinas (UNICAMP)
7
Sarah Quigley
University of California, San Francisco
8
Florian Jacques
Masaryk University
9
Shenghan Gao
Xi'an Jiaotong University
10
Arturo Merino
University of Chile

Rising Stars Papers

1
A general and efficient representation of ancestral recombination graphs
Genetics|2024
66 cit.
2
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs
Journal of Heuristics|2024
4 cit.
3
Reproduction-associated pathways in females of gibel carp (Carassius gibelio) shed light on the molecular mechanisms of the coexistence of asexual and sexual reproduction
BMC Genomics|2024
4 cit.
4
Recombinations, chains and caps: resolving problems with the DCJ-indel model
Algorithms for Molecular Biology|2024
3 cit.
5
Traversing Combinatorial 0/1-Polytopes via Optimization
SIAM Journal on Computing|2024
3 cit.
6
Centromere Landscapes Resolved from Hundreds of Human Genomes
Genomics Proteomics & Bioinformatics|2024
3 cit.
7
On the Two-Dimensional Knapsack Problem for Convex Polygons
ACM Transactions on Algorithms|2024
2 cit.
8
Differential expression of reproduction and sex-determining genes in the gonads of genotypic and temperature-induced males of gibel carp (Carassius gibelio)
Scientific Reports|2025
2 cit.
9
CRISPR Technology in Tumor Immunotherapy: Application, limitations, and Improvement Methods
Transactions on Materials Biotechnology and Life Sciences|2024
1 cit.
10
Reconstructing rearrangement phylogenies of natural genomes
Algorithms for Molecular Biology|2025
1 cit.

Emerging Leaders

Gaining momentum

Emerging Leaders Researchers

1
Donovan H. Parks
Ecogenomics (Japan)
2
Chong Chu
Harvard University
3
Chen-Shan Chin
Program for Appropriate Technology in Health
4
Faraz Hach
University of British Columbia
5
Adrian Altenhoff
Qatar Airways (Qatar)
6
Nicholas J. Mayhall
Virginia Tech
7
Camille Berthelot
Centre National de la Recherche Scientifique
8
Mohamed El Yafrani
Daiseung Medics (South Korea)
9
Zhongdi Qu
Cornell University
10
Denis Bertrand
Quantum Genomics (France)

Emerging Leaders Papers

1
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
Bioinformatics|2022
1.9k cit.
2
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
Nucleic Acids Research|2023
93 cit.
3
Adaptive, problem-tailored variational quantum eigensolver mitigates rough parameter landscapes and barren plateaus
npj Quantum Information|2023
84 cit.
4
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
Genome Research|2022
81 cit.
5
A First Runtime Analysis of the NSGA-II on a Multimodal Problem
IEEE Transactions on Evolutionary Computation|2023
69 cit.
6
Quantum self-consistent equation-of-motion method for computing molecular excitation energies, ionization potentials, and electron affinities on a quantum computer
Chemical Science|2023
57 cit.
7
Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes
Nature Methods|2023
53 cit.
8
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
Nucleic Acids Research|2025
48 cit.
9
From Understanding the Population Dynamics of the NSGA-II to the First Proven Lower Bounds
Proceedings of the AAAI Conference on Artificial Intelligence|2023
47 cit.
10
Runtime Analysis for the NSGA-II: Provable Speed-Ups from Crossover
Proceedings of the AAAI Conference on Artificial Intelligence|2023
47 cit.

Current Senior Leaders

Established & currently active

Current Senior Leaders Researchers

1
Pavel A. Pevzner
University of California San Diego
2
Thomas Madden
National Institutes of Health
3
David Sankoff
University of Ottawa
4
Matthew W. Hahn
Indiana University Bloomington
5
Bùi Quang Minh
Australian National University
6
Michael C. Schatz
Johns Hopkins University
7
Evgeny M. Zdobnov
SIB Swiss Institute of Bioinformatics
8
Carl Kingsford
Carnegie Mellon University
9
Tao Jiang
Xuzhou Medical College
10
Markus Göker
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures

Current Senior Leaders Papers

1
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Molecular Biology and Evolution|2014
27.5k cit.
2
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Journal of Computational Biology|2012
27.2k cit.
3
BLAST+: architecture and applications
BMC Bioinformatics|2009
23.2k cit.
4
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Molecular Biology and Evolution|2020
16.8k cit.
5
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Bioinformatics|2015
14.5k cit.
6
Salmon provides fast and bias-aware quantification of transcript expression
Nature Methods|2017
13.7k cit.
7
Genome sequence-based species delimitation with confidence intervals and improved distance functions
BMC Bioinformatics|2013
6.7k cit.
8
Assembly of long, error-prone reads using repeat graphs
Nature Biotechnology|2019
6.3k cit.
9
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
BMC Bioinformatics|2012
6.2k cit.
10
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Research|2016
5.7k cit.

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