Leaderboards/ChIP-seq

ChIP-seq

Last updated May 19, 2026

Rising Stars

New and hot

Rising Stars Researchers

1
Yunshun Chen
Unknown
1.6k cit.
2
Shira Landau
Toronto General Hospital
228 cit.
3
Yuming Huang
Union Hospital
206 cit.
4
Syed Nabeel‐Shah
Unknown
153 cit.
5
Junjie Zhu
Chinese Academy of Sciences
120 cit.
6
Xuanxuan Zhang
China Pharmaceutical University
113 cit.
7
Yonger Chen
Guangzhou University of Chinese Medicine
101 cit.
8
Damla Ovek
University of Oslo
96 cit.
9
Jing Hao
Renji Hospital
90 cit.
10
Natasha Hui Jin Ng
Agency for Science, Technology and Research
84 cit.

Rising Stars Papers

1
edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets
Nucleic Acids Research|2025
516 cit.
2
Primitive macrophages enable long-term vascularization of human heart-on-a-chip platforms
Cell stem cell|2024
75 cit.
3
Lumican promotes calcific aortic valve disease through H3 histone lactylation
European Heart Journal|2024
102 cit.
4
C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes
Molecular Cell|2024
50 cit.
5
Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view
Nature Genetics|2024
39 cit.
6
Lactate drives epithelial-mesenchymal transition in diabetic kidney disease via the H3K14la/KLF5 pathway
Redox Biology|2024
112 cit.
7
Discovery of vitexin as a novel VDR agonist that mitigates the transition from chronic intestinal inflammation to colorectal cancer
Molecular Cancer|2024
100 cit.
8
JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models
Nucleic Acids Research|2025
31 cit.
9
NR4A1 transcriptionally regulates the differentiation of stem-like CD8+ T cells in the tumor microenvironment
Cell Reports|2024
29 cit.
10
HNF4A and HNF1A exhibit tissue specific target gene regulation in pancreatic beta cells and hepatocytes
Nature Communications|2024
41 cit.

Rising Stars Reagents

Coming soon

Emerging Leaders

Gaining momentum

Emerging Leaders Researchers

1
Shinya Oki
Kyoto University
261 cit.
2
Ivan V. Kulakovskiy
Kazan Federal University
142 cit.
3
Wen‐Chi Chang
Academia Sinica
132 cit.
4
Pankaj K. Singh
Nebraska Medical Center
110 cit.
5
Liang Ma
Sichuan University
81 cit.
6
Qian Qian
Agricultural Genomics Institute at Shenzhen
63 cit.
7
Fangpu Han
Chinese Academy of Sciences
63 cit.
8
Clifford A. Meyer
Harvard University
62 cit.
9
Claudio Cantù
Linköping University
60 cit.
10
Changmeng Cai
Center for Personalized Cancer Treatment
59 cit.

Emerging Leaders Papers

1
ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data
Nucleic Acids Research|2024
174 cit.
2
Positive feedback regulation between glycolysis and histone lactylation drives oncogenesis in pancreatic ductal adenocarcinoma
Molecular Cancer|2024
293 cit.
3
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors
Nucleic Acids Research|2023
142 cit.
4
PlantPAN 4.0: updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters
Nucleic Acids Research|2023
132 cit.
5
Cancer-associated fibroblast-derived acetate promotes pancreatic cancer development by altering polyamine metabolism via the ACSS2–SP1–SAT1 axis
Nature Cell Biology|2024
73 cit.
6
Inhibition of ACSS2-mediated histone crotonylation alleviates kidney fibrosis via IL-1β-dependent macrophage activation and tubular cell senescence
Nature Communications|2024
81 cit.
7
A complete assembly of the rice Nipponbare reference genome
Molecular Plant|2023
190 cit.
8
Pan-centromere reveals widespread centromere repositioning of soybean genomes
Proceedings of the National Academy of Sciences|2023
63 cit.
9
Cistrome Data Browser: integrated search, analysis and visualization of chromatin data
Nucleic Acids Research|2023
62 cit.
10
The CUT&RUN suspect list of problematic regions of the genome
Genome biology|2023
60 cit.

Emerging Leaders Reagents

Coming soon

All-Time Leaders

The canon

All-Time Leaders Researchers

1
X. Shirley Liu
Dana-Farber Cancer Institute
62.5k cit.
2
Wolfgang Huber
European Molecular Biology Laboratory
49.1k cit.
3
Gordon K. Smyth
Walter and Eliza Hall Institute of Medical Research
17.4k cit.
4
Gill Bejerano
Stanford University
14.9k cit.
5
Qing‐Yu He
Jinan University
9.3k cit.
6
Huck‐Hui Ng
Genome Institute of Singapore
7.7k cit.
7
Jason S. Carroll
Cancer Research UK
7.1k cit.
8
J. Keith Joung
Harvard University
6.9k cit.
9
M Snyder
Stanford University
6.6k cit.
10
Timothy R. Hughes
University of Toronto
6k cit.

All-Time Leaders Papers

1
Model-based Analysis of ChIP-Seq (MACS)
Genome biology|2008
19.8k cit.
2
Differential expression analysis for sequence count data
Genome biology|2010
16.4k cit.
3
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Nucleic Acids Research|2012
5.8k cit.
4
GREAT improves functional interpretation of cis-regulatory regions
Nature Biotechnology|2010
5k cit.
5
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Bioinformatics|2015
4.6k cit.
6
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
Cell|2008
2.6k cit.
7
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
Nature|2012
2.4k cit.
8
GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
Nature Biotechnology|2014
2.3k cit.
9
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Genome Research|2012
2.2k cit.
10
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Cell|2014
2k cit.

All-Time Leaders Reagents

Coming soon

Indexing ChIP-seq Reagents

Citation data for reagents in this field is currently compiling.