Leaderboards/Biomedical Text Mining and Ontologies

Biomedical Text Mining and Ontologies

Last updated July 7, 2026

Rising Stars

New and hot

Rising Stars Researchers

1
Zhuorui Xie
Icahn School of Medicine at Mount Sinai
2
Craig Knox
University of Alberta
3
Renqian Luo
Microsoft Research Asia (China)
4
Dave Van Veen
Stanford Medicine
5
John Dagdelen
Lawrence Berkeley National Laboratory
6
Payal Chandak
Harvard–MIT Division of Health Sciences and Technology
7
Zexuan Zhong
Princeton University
8
Ayushi Agrawal
Gladstone Institutes
9
Noemí del‐Toro
AstraZeneca (Brazil)
10
María Cerezo
BGI Group (China)

Rising Stars Papers

1
Adapted large language models can outperform medical experts in clinical text summarization
Nature Medicine|2024
664 cit.
2
Structured information extraction from scientific text with large language models
Nature Communications|2024
586 cit.
3
The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity
Nucleic Acids Research|2024
340 cit.
4
Missing Wedge Completion via Unsupervised Learning with Coordinate Networks
International Journal of Molecular Sciences|2024
7 cit.
5
EveryQuery: Zero-Shot Clinical Prediction via Task-Conditioned Pretraining over Electronic Health Records
ArXiv.org|2026
0 cit.
6
Exploring Dairy-Derived Probiotics: Microbiological, Biochemical and Functional Profiling of Indigenous Lactic Acid Bacteria Isolates
The American Journal of Applied Sciences|2026
0 cit.
7
What Does the AI Doctor Value? Auditing Pluralism in the Clinical Ethics of Language Models
ArXiv.org|2026
0 cit.

Emerging Leaders

Gaining momentum

Emerging Leaders Researchers

1
Kanae Morishima
Kyoto Bunkyo University
2
Andreas Massouras
École Polytechnique Fédérale de Lausanne
3
Yingce Xia
Microsoft Research Asia (China)
4
Pallavi Subhraveti
SRI International
5
Zhiyong Lu
National Institutes of Health
6
Akshay Chaudhari
Intel (United States)
7
Ellen M. McDonagh
Wellcome Sanger Institute
8
Luning Hao
China Southern Power Grid (China)
9
Gholamreza Salimi‐Khorshidi
University of Oxford
10
Shishir Rao
University of Oxford

Emerging Leaders Papers

1
Adapted large language models can outperform medical experts in clinical text summarization
Nature Medicine|2024
664 cit.
2
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
Nucleic Acids Research|2022
443 cit.
3
An Explainable Transformer-Based Deep Learning Model for the Prediction of Incident Heart Failure
IEEE Journal of Biomedical and Health Informatics|2022
131 cit.
4
A vision–language foundation model for the generation of realistic chest X-ray images
Nature Biomedical Engineering|2024
88 cit.
5
Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
IEEE Transactions on Neural Networks and Learning Systems|2022
38 cit.
6
Noise2Recon: Enabling SNR‐robust MRI reconstruction with semi‐supervised and self‐supervised learning
Magnetic Resonance in Medicine|2023
33 cit.
7
Generalizability of Deep Learning Segmentation Algorithms for Automated Assessment of Cartilage Morphology and <scp>MRI</scp> Relaxometry
Journal of Magnetic Resonance Imaging|2022
32 cit.
8
SKM-TEA: A Dataset for Accelerated MRI Reconstruction with Dense Image Labels for Quantitative Clinical Evaluation
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition|2023
29 cit.
9
A dataset and benchmark for hospital course summarization with adapted large language models
Journal of the American Medical Informatics Association|2024
28 cit.
10
Conceptual Design and Optimisation of HTS Roebel Tapes
IEEE Transactions on Applied Superconductivity|2022
26 cit.

Current Senior Leaders

Established & currently active

Current Senior Leaders Researchers

1
José G. Conde
University of Puerto Rico System
2
Gavin Sherlock
Stanford University
3
Christian von Mering
SIB Swiss Institute of Bioinformatics
4
Lars Juhl Jensen
University of Copenhagen
5
Peer Bork
Max Delbrück Center
6
Peter D’Eustachio
Rockefeller University
7
Zhiyong Lu
State Administration of Cultural Heritage
8
Paul D. Thomas
University of Southern California
9
Henning Hermjakob
European Bioinformatics Institute
10
Donna Maglott
National Institutes of Health

Current Senior Leaders Papers

1
Research electronic data capture (REDCap)—A metadata-driven methodology and workflow process for providing translational research informatics support
Journal of Biomedical Informatics|2008
51.7k cit.
2
Gene Ontology: tool for the unification of biology
Nature Genetics|2000
44.6k cit.
3
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Nucleic Acids Research|2018
19.2k cit.
4
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Nucleic Acids Research|2021
11.7k cit.
5
STRING v10: protein–protein interaction networks, integrated over the tree of life
Nucleic Acids Research|2014
11.1k cit.
6
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
Nucleic Acids Research|2022
8.8k cit.
7
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Nucleic Acids Research|2020
8.6k cit.
8
Enterotypes of the human gut microbiome
Nature|2011
7.6k cit.
9
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
Nucleic Acids Research|2016
7.4k cit.
10
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Nucleic Acids Research|2019
6.5k cit.

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