Cited by 266Open Access
Radboud University Nijmegen
Publishes on Microbial Community Ecology and Physiology, Protist diversity and phylogeny, Photosynthetic Processes and Mechanisms. 42 papers and 1.7k citations.
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Picoplankton, i.e., cells smaller than 2–3 μm, dominate in most open oceanic regions, such as in the Pacific Ocean. In these areas, the dominant carotenoid of photosynthetic eukaryotes is 199‐hexanoyloxyfucoxanthin (19HF), considered to be a diagnostic marker for prymnesiophytes. This suggests that this class could be a major component of eukaryotic picoplankton, despite the fact that virtually no prymnesiophyte has been described to date from this size class. To address this question, we assessed prymnesiophyte diversity and abundance in natural picoplankton coμmunities, using a molecular approach. Total genomic DNA was isolated from 3‐μm‐filtered samples collected in the Pacific Ocean. Small subunit (18S) ribosomal RNA genes (rDNA) were amplified by the polymerase chain reaction (PCR) using universal eukaryotic primers. The relative abundance of 18S rDNA from prymnesiophytes was quantified using group‐specific and eukaryotic 18S rDNA probes. The percentage of the prymnesiophyte versus total 18S rDNA was much lower than the percentage of prymnesiophytes calculated on the basis of pigment analyses for the same samples. 18S rDNA libraries from five samples were screened using a prymnesiophyte‐specific oli‐gonucleotide probe, and 14 nearly complete 18S rDNA sequences were retrieved. Phylogenetic analysis of these sequences established the presence of several prymnesiophyte lineages with no equivalent among cultivated species.
The prochlorophytes are oxygenic prokaryotes differing from other cyanobacteria by the presence of a light-harvesting system containing both chlorophylls (Chls) a and b and by the absence of phycobilins. We demonstrate here that the Chl a/b binding proteins from all three known prochlorophyte genera are closely related to IsiA, a cyanobacterial Chl a-binding protein induced by iron starvation, and to CP43, a constitutively expressed Chl a antenna protein of photosystem II. The prochlorophyte Chl a/b protein (pcb) genes do not belong to the extended gene family encoding eukaryotic Chl a/b and Chl a/c light-harvesting proteins. Although higher plants and prochlorophytes share common pigment complements, their light-harvesting systems have evolved independently.