De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysisBrian J. Haas, Aviv Regev, Alexie Papanicolaou et al.|Nature Protocols|2013Cited by 9.1k
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methodsBrian J. Haas, Aviv Regev, Bo Li et al.|Genome biology|2019Cited by 698
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencingAndrew Kirby, Mark J. Daly, Andreas Gnirke et al.|Nature Genetics|2013Cited by 317
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with TrinityBrian J. Haas, Aviv Regev, Alexie Papanicolaou et al.|DSpace@MIT (Massachusetts Institute of Technology)|2013Cited by 93
RNA-Seq methods for imperfect samples: development, evaluation and applicationsXian Adiconis, Joshua Z. Levin, Lin Fan et al.|Genome biology|2011Cited by 58