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Ahmet F. Coskun

Georgia Institute of Technology

ORCID: 0000-0002-5797-1524

Publishes on Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, Advanced Fluorescence Microscopy Techniques. 135 papers and 6.2k citations.

135Publications
6.2kTotal Citations

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Top publicationsby citations

Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution
Waheb Bishara, Ting‐Wei Su, Ahmet F. Coskun et al.|Optics Express|2010
Cited by 432Open Access

We demonstrate lensfree holographic microscopy on a chip to achieve approximately 0.6 microm spatial resolution corresponding to a numerical aperture of approximately 0.5 over a large field-of-view of approximately 24 mm2. By using partially coherent illumination from a large aperture (approximately 50 microm), we acquire lower resolution lensfree in-line holograms of the objects with unit fringe magnification. For each lensfree hologram, the pixel size at the sensor chip limits the spatial resolution of the reconstructed image. To circumvent this limitation, we implement a sub-pixel shifting based super-resolution algorithm to effectively recover much higher resolution digital holograms of the objects, permitting sub-micron spatial resolution to be achieved across the entire sensor chip active area, which is also equivalent to the imaging field-of-view (24 mm2) due to unit magnification. We demonstrate the success of this pixel super-resolution approach by imaging patterned transparent substrates, blood smear samples, as well as Caenoharbditis Elegans.

Optofluidic Fluorescent Imaging Cytometry on a Cell Phone
Hongying Zhu, Sam Mavandadi, Ahmet F. Coskun et al.|Analytical Chemistry|2011
Cited by 393

Fluorescent microscopy and flow cytometry are widely used tools in biomedical sciences. Cost-effective translation of these technologies to remote and resource-limited environments could create new opportunities especially for telemedicine applications. Toward this direction, here we demonstrate the integration of imaging cytometry and fluorescent microscopy on a cell phone using a compact, lightweight, and cost-effective optofluidic attachment. In this cell-phone-based optofluidic imaging cytometry platform, fluorescently labeled particles or cells of interest are continuously delivered to our imaging volume through a disposable microfluidic channel that is positioned above the existing camera unit of the cell phone. The same microfluidic device also acts as a multilayered optofluidic waveguide and efficiently guides our excitation light, which is butt-coupled from the side facets of our microfluidic channel using inexpensive light-emitting diodes. Since the excitation of the sample volume occurs through guided waves that propagate perpendicular to the detection path, our cell-phone camera can record fluorescent movies of the specimens as they are flowing through the microchannel. The digital frames of these fluorescent movies are then rapidly processed to quantify the count and the density of the labeled particles/cells within the target solution of interest. We tested the performance of our cell-phone-based imaging cytometer by measuring the density of white blood cells in human blood samples, which provided a decent match to a commercially available hematology analyzer. We further characterized the imaging quality of the same platform to demonstrate a spatial resolution of ~2 μm. This cell-phone-enabled optofluidic imaging flow cytometer could especially be useful for rapid and sensitive imaging of bodily fluids for conducting various cell counts (e.g., toward monitoring of HIV+ patients) or rare cell analysis as well as for screening of water quality in remote and resource-poor settings.

Handheld high-throughput plasmonic biosensor using computational on-chip imaging
Arif E. Çetin, Ahmet F. Coskun, Betty C. Galarreta et al.|Light Science & Applications|2014
Cited by 353Open Access

We demonstrate a handheld on-chip biosensing technology that employs plasmonic microarrays coupled with a lens-free computational imaging system towards multiplexed and high-throughput screening of biomolecular interactions for point-of-care applications and resource-limited settings. This lightweight and field-portable biosensing device, weighing 60 g and 7.5 cm tall, utilizes a compact optoelectronic sensor array to record the diffraction patterns of plasmonic nanostructures under uniform illumination by a single-light emitting diode tuned to the plasmonic mode of the nanoapertures. Employing a sensitive plasmonic array design that is combined with lens-free computational imaging, we demonstrate label-free and quantitative detection of biomolecules with a protein layer thickness down to 3 nm. Integrating large-scale plasmonic microarrays, our on-chip imaging platform enables simultaneous detection of protein mono- and bilayers on the same platform over a wide range of biomolecule concentrations. In this handheld device, we also employ an iterative phase retrieval-based image reconstruction method, which offers the ability to digitally image a highly multiplexed array of sensors on the same plasmonic chip, making this approach especially suitable for high-throughput diagnostic applications in field settings. A handheld biosensor that employs lens-free imaging on a plasmonic chip could simplify high-throughput protein detection. The device, developed by Arif Cetin and co-workers at Boston University and the University of California at Los Angeles in the USA, promises label-free quantitative detection of large variety of proteins on the same sensor chip. The unit, which is battery-powered, 7.5 cm tall and just 60 g in weight, operates by transmitting light from an LED through a functionalized plasmonic chip containing an array of periodic nanoholes in a gold film. The diffraction pattern of the nanoapertures is recorded by a CMOS image sensor. The presence of a protein monolayer as thin as 3 nm that binds to the plasmonic chip induces a dramatic change in the diffraction pattern sampled by the image sensor chip.