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Tjerk P. Straatsma

Oak Ridge National Laboratory

ORCID: 0000-0002-7425-9715

Publishes on Protein Structure and Dynamics, Spectroscopy and Quantum Chemical Studies, Advanced Chemical Physics Studies. 139 papers and 24.1k citations.

139Publications
24.1kTotal Citations

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Top publicationsby citations

The missing term in effective pair potentials
Herman J. C. Berendsen, J. Raúl Grigera, Tjerk P. Straatsma|The Journal of Physical Chemistry|1987
Cited by 13.4k

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe missing term in effective pair potentialsH. J. C. Berendsen, J. R. Grigera, and T. P. StraatsmaCite this: J. Phys. Chem. 1987, 91, 24, 6269–6271Publication Date (Print):November 1, 1987Publication History Published online1 May 2002Published inissue 1 November 1987https://pubs.acs.org/doi/10.1021/j100308a038https://doi.org/10.1021/j100308a038research-articleACS PublicationsRequest reuse permissionsArticle Views22164Altmetric-Citations10802LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts

Free energy of ionic hydration: Analysis of a thermodynamic integration technique to evaluate free energy differences by molecular dynamics simulations
Tjerk P. Straatsma, Herman J. C. Berendsen|The Journal of Chemical Physics|1988
Cited by 517Open Access

The thermodynamic integration technique to evaluate free energy differences by molecular dynamics simulations is analyzed. The hydration of the ions Na+ , K+ , Ca++ , F−, Cl−, and Br− is used as the process to illustrate the potential utility of the method. A neon–water system is used as a reference system. The parameters that influence the performance and accuracy of the thermodynamic integration, in which the potential interaction parameters are gradually and continuously changed, are studied. These parameters include the total simulation time, the magnitude of the time step for the numerical integration of the equations of motion, the system size, and the cutoff radii for the intermolecular interactions. Fast convergence is found for the Gibbs free energy difference between Ne and Na+ with respect to total simulation time. The time step and system size are relatively unimportant. The use of cutoff radii, for the ion–water but especially unfortunately also the water–water intermolecular interactions, seriously influences the results obtained. A simple correction for the use of cutoff radii cannot be made. Results are compared to experimental values.