J

Johan Rung

Uppsala University

ORCID: 0000-0001-5875-8429

Publishes on Gene expression and cancer classification, Bioinformatics and Genomic Networks, Genetic Associations and Epidemiology. 61 papers and 7.1k citations.

61Publications
7.1kTotal Citations

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Top publicationsby citations

ArrayExpress update—trends in database growth and links to data analysis tools
Gabriella Rustici, N. N. Kolesnikov, Marco Brandizi et al.|Nucleic Acids Research|2012
Cited by 375Open Access

The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.